Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt manY and sorM are separated by 10 nucleotides sorM and sorE are separated by 51 nucleotides sorE and pepE are separated by 382 nucleotides
MCAODC_03715: manY - PTS mannose/fructose/sorbose transporter subunit IIC, at 744,313 to 745,110
manY
MCAODC_03720: sorM - PTS system sorbose-specific EIID component, at 745,121 to 745,945
sorM
MCAODC_03725: sorE - L-sorbose 1-phosphate reductase, at 745,997 to 747,226
sorE
MCAODC_03730: pepE - dipeptidase PepE, at 747,609 to 748,298
pepE
Position (kb) 745
746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.024 kb on + strand, within manY at 745.025 kb on - strand, within manY at 745.034 kb on + strand at 745.035 kb on - strand at 745.050 kb on + strand at 745.139 kb on - strand at 745.196 kb on - strand at 745.207 kb on + strand, within sorM at 745.208 kb on - strand, within sorM at 745.312 kb on + strand, within sorM at 745.313 kb on - strand, within sorM at 745.313 kb on - strand, within sorM at 745.313 kb on - strand, within sorM at 745.315 kb on + strand, within sorM at 745.329 kb on + strand, within sorM at 745.329 kb on + strand, within sorM at 745.330 kb on - strand, within sorM at 745.330 kb on - strand, within sorM at 745.330 kb on - strand, within sorM at 745.330 kb on - strand, within sorM at 745.622 kb on - strand, within sorM at 745.731 kb on + strand, within sorM at 745.732 kb on - strand, within sorM at 745.732 kb on - strand, within sorM at 745.732 kb on - strand, within sorM at 745.843 kb on - strand, within sorM at 745.909 kb on - strand at 746.027 kb on - strand at 746.027 kb on - strand at 746.027 kb on - strand at 746.268 kb on - strand, within sorE at 746.359 kb on + strand, within sorE at 746.399 kb on + strand, within sorE at 746.399 kb on + strand, within sorE at 746.399 kb on + strand, within sorE at 746.399 kb on + strand, within sorE at 746.400 kb on - strand, within sorE at 746.415 kb on - strand, within sorE at 746.474 kb on + strand, within sorE at 746.474 kb on + strand, within sorE at 746.474 kb on + strand, within sorE at 746.474 kb on + strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.475 kb on - strand, within sorE at 746.491 kb on + strand, within sorE at 746.491 kb on + strand, within sorE at 746.491 kb on + strand, within sorE at 746.491 kb on + strand, within sorE at 746.492 kb on - strand, within sorE at 746.492 kb on - strand, within sorE at 746.492 kb on - strand, within sorE at 746.495 kb on + strand, within sorE at 746.495 kb on + strand, within sorE at 746.495 kb on + strand, within sorE at 746.495 kb on + strand, within sorE at 746.496 kb on - strand, within sorE at 746.496 kb on - strand, within sorE at 746.497 kb on + strand, within sorE at 746.498 kb on - strand, within sorE at 746.498 kb on - strand, within sorE at 746.586 kb on + strand, within sorE at 746.587 kb on - strand, within sorE at 746.587 kb on - strand, within sorE at 746.638 kb on + strand, within sorE at 746.638 kb on + strand, within sorE at 746.639 kb on - strand, within sorE at 746.649 kb on - strand, within sorE at 746.663 kb on + strand, within sorE at 746.693 kb on + strand, within sorE at 746.693 kb on + strand, within sorE at 746.722 kb on + strand, within sorE at 746.727 kb on + strand, within sorE at 746.779 kb on + strand, within sorE at 746.780 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.858 kb on - strand, within sorE at 746.897 kb on + strand, within sorE at 746.897 kb on + strand, within sorE at 746.905 kb on + strand, within sorE at 746.913 kb on - strand, within sorE at 746.913 kb on - strand, within sorE at 747.007 kb on + strand, within sorE at 747.007 kb on + strand, within sorE at 747.007 kb on + strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.008 kb on - strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.080 kb on + strand, within sorE at 747.081 kb on - strand, within sorE at 747.081 kb on - strand, within sorE at 747.092 kb on + strand, within sorE at 747.092 kb on + strand, within sorE at 747.093 kb on - strand, within sorE at 747.224 kb on + strand at 747.234 kb on - strand at 747.238 kb on - strand at 747.238 kb on - strand at 747.329 kb on - strand at 747.375 kb on - strand at 747.441 kb on + strand at 747.451 kb on - strand at 747.458 kb on - strand at 747.472 kb on + strand at 747.523 kb on + strand at 747.524 kb on - strand at 747.524 kb on - strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.548 kb on + strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.549 kb on - strand at 747.570 kb on + strand at 747.571 kb on - strand at 747.571 kb on - strand at 747.592 kb on + strand at 747.593 kb on - strand at 747.593 kb on - strand at 747.623 kb on - strand at 747.630 kb on - strand at 747.630 kb on - strand at 747.717 kb on - strand, within pepE at 747.753 kb on + strand, within pepE at 747.753 kb on + strand, within pepE at 747.754 kb on - strand, within pepE at 747.812 kb on + strand, within pepE at 747.875 kb on + strand, within pepE at 747.876 kb on - strand, within pepE at 747.926 kb on + strand, within pepE at 747.927 kb on - strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.954 kb on + strand, within pepE at 747.955 kb on - strand, within pepE at 747.956 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.001 kb on + strand, within pepE at 748.002 kb on - strand, within pepE at 748.002 kb on - strand, within pepE at 748.014 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.131 kb on - strand, within pepE at 748.206 kb on - strand, within pepE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 745,024 + manY MCAODC_03715 0.89 -0.2 745,025 - manY MCAODC_03715 0.89 -0.3 745,034 + +0.2 745,035 - -0.5 745,050 + -0.7 745,139 - +0.2 745,196 - -1.4 745,207 + sorM MCAODC_03720 0.10 -1.2 745,208 - sorM MCAODC_03720 0.11 +0.1 745,312 + sorM MCAODC_03720 0.23 -1.2 745,313 - sorM MCAODC_03720 0.23 +0.1 745,313 - sorM MCAODC_03720 0.23 -0.3 745,313 - sorM MCAODC_03720 0.23 -0.5 745,315 + sorM MCAODC_03720 0.24 +0.3 745,329 + sorM MCAODC_03720 0.25 -0.2 745,329 + sorM MCAODC_03720 0.25 +0.3 745,330 - sorM MCAODC_03720 0.25 +1.7 745,330 - sorM MCAODC_03720 0.25 +0.6 745,330 - sorM MCAODC_03720 0.25 +0.0 745,330 - sorM MCAODC_03720 0.25 -1.0 745,622 - sorM MCAODC_03720 0.61 +0.7 745,731 + sorM MCAODC_03720 0.74 +0.3 745,732 - sorM MCAODC_03720 0.74 -0.0 745,732 - sorM MCAODC_03720 0.74 +0.5 745,732 - sorM MCAODC_03720 0.74 -0.4 745,843 - sorM MCAODC_03720 0.88 -2.5 745,909 - +1.4 746,027 - -0.1 746,027 - +0.6 746,027 - +1.0 746,268 - sorE MCAODC_03725 0.22 +0.2 746,359 + sorE MCAODC_03725 0.29 -0.6 746,399 + sorE MCAODC_03725 0.33 +0.6 746,399 + sorE MCAODC_03725 0.33 -0.3 746,399 + sorE MCAODC_03725 0.33 +0.9 746,399 + sorE MCAODC_03725 0.33 -0.1 746,400 - sorE MCAODC_03725 0.33 -0.0 746,415 - sorE MCAODC_03725 0.34 +0.3 746,474 + sorE MCAODC_03725 0.39 +2.1 746,474 + sorE MCAODC_03725 0.39 -0.8 746,474 + sorE MCAODC_03725 0.39 -0.4 746,474 + sorE MCAODC_03725 0.39 +0.9 746,475 - sorE MCAODC_03725 0.39 +1.6 746,475 - sorE MCAODC_03725 0.39 -0.1 746,475 - sorE MCAODC_03725 0.39 +0.2 746,475 - sorE MCAODC_03725 0.39 -2.1 746,475 - sorE MCAODC_03725 0.39 +0.2 746,475 - sorE MCAODC_03725 0.39 -0.0 746,475 - sorE MCAODC_03725 0.39 -1.4 746,475 - sorE MCAODC_03725 0.39 +0.4 746,491 + sorE MCAODC_03725 0.40 +0.7 746,491 + sorE MCAODC_03725 0.40 -0.8 746,491 + sorE MCAODC_03725 0.40 +0.1 746,491 + sorE MCAODC_03725 0.40 +1.5 746,492 - sorE MCAODC_03725 0.40 -1.2 746,492 - sorE MCAODC_03725 0.40 +0.7 746,492 - sorE MCAODC_03725 0.40 -0.2 746,495 + sorE MCAODC_03725 0.40 +0.5 746,495 + sorE MCAODC_03725 0.40 +0.2 746,495 + sorE MCAODC_03725 0.40 -1.2 746,495 + sorE MCAODC_03725 0.40 +0.9 746,496 - sorE MCAODC_03725 0.41 +0.1 746,496 - sorE MCAODC_03725 0.41 -0.2 746,497 + sorE MCAODC_03725 0.41 +0.4 746,498 - sorE MCAODC_03725 0.41 -0.4 746,498 - sorE MCAODC_03725 0.41 -0.8 746,586 + sorE MCAODC_03725 0.48 +0.1 746,587 - sorE MCAODC_03725 0.48 -1.3 746,587 - sorE MCAODC_03725 0.48 -0.1 746,638 + sorE MCAODC_03725 0.52 +0.0 746,638 + sorE MCAODC_03725 0.52 +0.2 746,639 - sorE MCAODC_03725 0.52 +0.7 746,649 - sorE MCAODC_03725 0.53 +0.1 746,663 + sorE MCAODC_03725 0.54 +0.2 746,693 + sorE MCAODC_03725 0.57 +1.4 746,693 + sorE MCAODC_03725 0.57 +0.2 746,722 + sorE MCAODC_03725 0.59 -0.9 746,727 + sorE MCAODC_03725 0.59 -0.5 746,779 + sorE MCAODC_03725 0.64 +0.4 746,780 - sorE MCAODC_03725 0.64 +0.1 746,858 - sorE MCAODC_03725 0.70 -1.8 746,858 - sorE MCAODC_03725 0.70 -0.3 746,858 - sorE MCAODC_03725 0.70 +0.7 746,897 + sorE MCAODC_03725 0.73 +0.4 746,897 + sorE MCAODC_03725 0.73 -0.3 746,905 + sorE MCAODC_03725 0.74 -0.6 746,913 - sorE MCAODC_03725 0.74 +0.7 746,913 - sorE MCAODC_03725 0.74 +0.5 747,007 + sorE MCAODC_03725 0.82 -1.5 747,007 + sorE MCAODC_03725 0.82 -0.3 747,007 + sorE MCAODC_03725 0.82 +0.2 747,008 - sorE MCAODC_03725 0.82 +1.4 747,008 - sorE MCAODC_03725 0.82 -0.3 747,008 - sorE MCAODC_03725 0.82 -0.0 747,008 - sorE MCAODC_03725 0.82 +1.9 747,080 + sorE MCAODC_03725 0.88 -0.1 747,080 + sorE MCAODC_03725 0.88 -0.2 747,080 + sorE MCAODC_03725 0.88 -0.9 747,080 + sorE MCAODC_03725 0.88 -1.6 747,081 - sorE MCAODC_03725 0.88 -0.2 747,081 - sorE MCAODC_03725 0.88 -0.4 747,092 + sorE MCAODC_03725 0.89 +0.8 747,092 + sorE MCAODC_03725 0.89 +0.2 747,093 - sorE MCAODC_03725 0.89 -1.1 747,224 + +1.1 747,234 - +0.5 747,238 - +0.4 747,238 - -2.4 747,329 - +2.4 747,375 - +0.8 747,441 + +0.8 747,451 - +0.9 747,458 - -0.6 747,472 + +0.7 747,523 + -0.7 747,524 - +0.2 747,524 - -0.5 747,548 + +0.1 747,548 + -1.1 747,548 + -3.5 747,548 + +1.1 747,549 - -0.0 747,549 - -0.5 747,549 - -0.3 747,570 + -0.3 747,571 - -0.5 747,571 - -0.8 747,592 + +0.8 747,593 - +0.9 747,593 - -0.1 747,623 - -0.2 747,630 - -0.6 747,630 - -1.3 747,717 - pepE MCAODC_03730 0.16 +0.2 747,753 + pepE MCAODC_03730 0.21 +0.3 747,753 + pepE MCAODC_03730 0.21 +0.3 747,754 - pepE MCAODC_03730 0.21 -0.2 747,812 + pepE MCAODC_03730 0.29 +0.7 747,875 + pepE MCAODC_03730 0.39 +0.9 747,876 - pepE MCAODC_03730 0.39 -0.9 747,926 + pepE MCAODC_03730 0.46 -1.0 747,927 - pepE MCAODC_03730 0.46 -2.5 747,954 + pepE MCAODC_03730 0.50 +1.2 747,954 + pepE MCAODC_03730 0.50 +0.3 747,954 + pepE MCAODC_03730 0.50 +0.7 747,954 + pepE MCAODC_03730 0.50 +0.2 747,954 + pepE MCAODC_03730 0.50 +2.2 747,954 + pepE MCAODC_03730 0.50 -0.2 747,955 - pepE MCAODC_03730 0.50 -0.1 747,956 + pepE MCAODC_03730 0.50 -0.8 748,001 + pepE MCAODC_03730 0.57 +0.8 748,001 + pepE MCAODC_03730 0.57 -0.4 748,002 - pepE MCAODC_03730 0.57 -2.6 748,002 - pepE MCAODC_03730 0.57 -0.0 748,014 - pepE MCAODC_03730 0.59 -0.3 748,131 - pepE MCAODC_03730 0.76 +0.2 748,131 - pepE MCAODC_03730 0.76 +0.9 748,206 - pepE MCAODC_03730 0.87 -1.4
Or see this region's nucleotide sequence