Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrA and yjbR are separated by 34 nucleotides yjbR and yjbQ are separated by 3 nucleotides yjbQ and aphA are separated by 110 nucleotides aphA and MCAODC_03425 are separated by 400 nucleotides
MCAODC_03405: uvrA - excinuclease ABC subunit UvrA, at 687,047 to 689,869
uvrA
MCAODC_03410: yjbR - Uncharacterized protein YjbR, at 689,904 to 690,260
yjbR
MCAODC_03415: yjbQ - UPF0047 protein YjbQ, at 690,264 to 690,680
yjbQ
MCAODC_03420: aphA - acid phosphatase AphA, at 690,791 to 691,504
aphA
MCAODC_03425: MCAODC_03425 - hypothetical protein, at 691,905 to 692,264
_03425
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.839 kb on + strand at 689.840 kb on - strand at 689.924 kb on + strand at 689.943 kb on + strand, within yjbR at 689.944 kb on - strand, within yjbR at 689.962 kb on + strand, within yjbR at 689.981 kb on - strand, within yjbR at 689.981 kb on - strand, within yjbR at 689.983 kb on + strand, within yjbR at 689.984 kb on - strand, within yjbR at 689.984 kb on - strand, within yjbR at 690.017 kb on - strand, within yjbR at 690.017 kb on - strand, within yjbR at 690.017 kb on - strand, within yjbR at 690.038 kb on + strand, within yjbR at 690.039 kb on - strand, within yjbR at 690.136 kb on - strand, within yjbR at 690.136 kb on - strand, within yjbR at 690.159 kb on + strand, within yjbR at 690.160 kb on - strand, within yjbR at 690.160 kb on - strand, within yjbR at 690.160 kb on - strand, within yjbR at 690.160 kb on - strand, within yjbR at 690.198 kb on - strand, within yjbR at 690.235 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.240 kb on + strand at 690.241 kb on - strand at 690.241 kb on - strand at 690.241 kb on - strand at 690.276 kb on + strand at 690.365 kb on + strand, within yjbQ at 690.378 kb on + strand, within yjbQ at 690.378 kb on + strand, within yjbQ at 690.378 kb on + strand, within yjbQ at 690.378 kb on + strand, within yjbQ at 690.379 kb on - strand, within yjbQ at 690.379 kb on - strand, within yjbQ at 690.411 kb on - strand, within yjbQ at 690.411 kb on - strand, within yjbQ at 690.422 kb on + strand, within yjbQ at 690.439 kb on + strand, within yjbQ at 690.439 kb on + strand, within yjbQ at 690.439 kb on + strand, within yjbQ at 690.451 kb on + strand, within yjbQ at 690.452 kb on - strand, within yjbQ at 690.504 kb on + strand, within yjbQ at 690.505 kb on - strand, within yjbQ at 690.527 kb on + strand, within yjbQ at 690.528 kb on - strand, within yjbQ at 690.528 kb on - strand, within yjbQ at 690.528 kb on - strand, within yjbQ at 690.528 kb on - strand, within yjbQ at 690.548 kb on + strand, within yjbQ at 690.548 kb on + strand, within yjbQ at 690.548 kb on + strand, within yjbQ at 690.549 kb on - strand, within yjbQ at 690.549 kb on - strand, within yjbQ at 690.549 kb on - strand, within yjbQ at 690.549 kb on - strand, within yjbQ at 690.570 kb on + strand, within yjbQ at 690.593 kb on + strand, within yjbQ at 690.674 kb on - strand at 690.696 kb on - strand at 690.853 kb on - strand at 690.853 kb on - strand at 690.857 kb on - strand at 690.857 kb on - strand at 690.917 kb on - strand, within aphA at 690.917 kb on - strand, within aphA at 691.124 kb on + strand, within aphA at 691.124 kb on + strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.125 kb on - strand, within aphA at 691.132 kb on + strand, within aphA at 691.132 kb on + strand, within aphA at 691.133 kb on - strand, within aphA at 691.205 kb on + strand, within aphA at 691.221 kb on + strand, within aphA at 691.221 kb on + strand, within aphA at 691.222 kb on - strand, within aphA at 691.283 kb on + strand, within aphA at 691.399 kb on + strand, within aphA at 691.519 kb on - strand at 691.525 kb on + strand at 691.604 kb on - strand at 691.639 kb on + strand at 691.648 kb on + strand at 691.699 kb on + strand at 691.705 kb on + strand at 691.863 kb on - strand at 691.875 kb on - strand at 691.946 kb on - strand, within MCAODC_03425 at 692.010 kb on - strand, within MCAODC_03425 at 692.107 kb on + strand, within MCAODC_03425 at 692.138 kb on + strand, within MCAODC_03425 at 692.142 kb on + strand, within MCAODC_03425 at 692.197 kb on - strand, within MCAODC_03425
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 689,839 + -0.3 689,840 - +0.1 689,924 + +0.7 689,943 + yjbR MCAODC_03410 0.11 -0.3 689,944 - yjbR MCAODC_03410 0.11 +0.6 689,962 + yjbR MCAODC_03410 0.16 -0.5 689,981 - yjbR MCAODC_03410 0.22 +0.2 689,981 - yjbR MCAODC_03410 0.22 +0.1 689,983 + yjbR MCAODC_03410 0.22 -0.5 689,984 - yjbR MCAODC_03410 0.22 +0.2 689,984 - yjbR MCAODC_03410 0.22 -0.3 690,017 - yjbR MCAODC_03410 0.32 +2.6 690,017 - yjbR MCAODC_03410 0.32 +0.9 690,017 - yjbR MCAODC_03410 0.32 -0.1 690,038 + yjbR MCAODC_03410 0.38 +0.7 690,039 - yjbR MCAODC_03410 0.38 +0.3 690,136 - yjbR MCAODC_03410 0.65 -0.9 690,136 - yjbR MCAODC_03410 0.65 -2.9 690,159 + yjbR MCAODC_03410 0.71 -0.8 690,160 - yjbR MCAODC_03410 0.72 -0.2 690,160 - yjbR MCAODC_03410 0.72 -0.5 690,160 - yjbR MCAODC_03410 0.72 -0.3 690,160 - yjbR MCAODC_03410 0.72 +0.4 690,198 - yjbR MCAODC_03410 0.82 +0.7 690,235 + +0.3 690,240 + +0.1 690,240 + +0.6 690,240 + -1.5 690,240 + -0.5 690,240 + -0.7 690,240 + -0.3 690,240 + +0.3 690,240 + -0.4 690,240 + +0.6 690,241 - +0.7 690,241 - -1.6 690,241 - -0.3 690,276 + +0.0 690,365 + yjbQ MCAODC_03415 0.24 +0.6 690,378 + yjbQ MCAODC_03415 0.27 +0.3 690,378 + yjbQ MCAODC_03415 0.27 -0.6 690,378 + yjbQ MCAODC_03415 0.27 -0.3 690,378 + yjbQ MCAODC_03415 0.27 +1.1 690,379 - yjbQ MCAODC_03415 0.28 -1.0 690,379 - yjbQ MCAODC_03415 0.28 +0.5 690,411 - yjbQ MCAODC_03415 0.35 -1.3 690,411 - yjbQ MCAODC_03415 0.35 -3.5 690,422 + yjbQ MCAODC_03415 0.38 -0.2 690,439 + yjbQ MCAODC_03415 0.42 +0.3 690,439 + yjbQ MCAODC_03415 0.42 -1.3 690,439 + yjbQ MCAODC_03415 0.42 +0.3 690,451 + yjbQ MCAODC_03415 0.45 -0.2 690,452 - yjbQ MCAODC_03415 0.45 +0.2 690,504 + yjbQ MCAODC_03415 0.58 +0.1 690,505 - yjbQ MCAODC_03415 0.58 +0.2 690,527 + yjbQ MCAODC_03415 0.63 +0.3 690,528 - yjbQ MCAODC_03415 0.63 +0.6 690,528 - yjbQ MCAODC_03415 0.63 +0.8 690,528 - yjbQ MCAODC_03415 0.63 +0.2 690,528 - yjbQ MCAODC_03415 0.63 -0.7 690,548 + yjbQ MCAODC_03415 0.68 +0.6 690,548 + yjbQ MCAODC_03415 0.68 +0.9 690,548 + yjbQ MCAODC_03415 0.68 +0.6 690,549 - yjbQ MCAODC_03415 0.68 -2.6 690,549 - yjbQ MCAODC_03415 0.68 +0.4 690,549 - yjbQ MCAODC_03415 0.68 +1.1 690,549 - yjbQ MCAODC_03415 0.68 -0.3 690,570 + yjbQ MCAODC_03415 0.73 -3.0 690,593 + yjbQ MCAODC_03415 0.79 -0.0 690,674 - +0.2 690,696 - +0.7 690,853 - -1.8 690,853 - +0.7 690,857 - +0.5 690,857 - +0.4 690,917 - aphA MCAODC_03420 0.18 -1.6 690,917 - aphA MCAODC_03420 0.18 +1.7 691,124 + aphA MCAODC_03420 0.47 -0.5 691,124 + aphA MCAODC_03420 0.47 -0.5 691,125 - aphA MCAODC_03420 0.47 -0.9 691,125 - aphA MCAODC_03420 0.47 +1.4 691,125 - aphA MCAODC_03420 0.47 +0.7 691,125 - aphA MCAODC_03420 0.47 +0.1 691,125 - aphA MCAODC_03420 0.47 +1.7 691,125 - aphA MCAODC_03420 0.47 -1.0 691,132 + aphA MCAODC_03420 0.48 +0.5 691,132 + aphA MCAODC_03420 0.48 -0.8 691,133 - aphA MCAODC_03420 0.48 +1.3 691,205 + aphA MCAODC_03420 0.58 -0.4 691,221 + aphA MCAODC_03420 0.60 -0.9 691,221 + aphA MCAODC_03420 0.60 -0.4 691,222 - aphA MCAODC_03420 0.60 -2.7 691,283 + aphA MCAODC_03420 0.69 -2.0 691,399 + aphA MCAODC_03420 0.85 +0.5 691,519 - +0.2 691,525 + -0.7 691,604 - -1.2 691,639 + -0.5 691,648 + -0.2 691,699 + -0.2 691,705 + +0.6 691,863 - -1.7 691,875 - +0.1 691,946 - MCAODC_03425 0.11 -0.1 692,010 - MCAODC_03425 0.29 +0.8 692,107 + MCAODC_03425 0.56 +1.2 692,138 + MCAODC_03425 0.65 -1.3 692,142 + MCAODC_03425 0.66 +0.1 692,197 - MCAODC_03425 0.81 +1.1
Or see this region's nucleotide sequence