Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt treR and treB are separated by 118 nucleotides treB and treC are separated by 49 nucleotides
MCAODC_02395: treR - trehalose operon repressor TreR, at 491,298 to 492,245
treR
MCAODC_02400: treB - PTS trehalose transporter subunit IIBC, at 492,364 to 493,785
treB
MCAODC_02405: treC - alpha,alpha-phosphotrehalase, at 493,835 to 495,490
treC
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 491.504 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.563 kb on - strand, within treR at 491.563 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.614 kb on + strand, within treR at 491.615 kb on - strand, within treR at 491.615 kb on - strand, within treR at 491.648 kb on + strand, within treR at 491.652 kb on - strand, within treR at 491.662 kb on + strand, within treR at 491.662 kb on + strand, within treR at 491.663 kb on - strand, within treR at 491.663 kb on - strand, within treR at 491.687 kb on - strand, within treR at 491.687 kb on - strand, within treR at 491.767 kb on - strand, within treR at 491.808 kb on + strand, within treR at 491.809 kb on - strand, within treR at 491.825 kb on + strand, within treR at 491.825 kb on + strand, within treR at 491.825 kb on + strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.828 kb on + strand, within treR at 491.828 kb on + strand, within treR at 491.890 kb on - strand, within treR at 491.913 kb on - strand, within treR at 491.948 kb on + strand, within treR at 491.948 kb on + strand, within treR at 491.949 kb on - strand, within treR at 491.962 kb on - strand, within treR at 491.971 kb on + strand, within treR at 491.971 kb on + strand, within treR at 491.971 kb on + strand, within treR at 491.972 kb on - strand, within treR at 491.972 kb on - strand, within treR at 491.984 kb on + strand, within treR at 491.997 kb on - strand, within treR at 492.004 kb on + strand, within treR at 492.005 kb on - strand, within treR at 492.041 kb on + strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.095 kb on + strand, within treR at 492.095 kb on + strand, within treR at 492.096 kb on - strand, within treR at 492.096 kb on - strand, within treR at 492.096 kb on - strand, within treR at 492.137 kb on - strand, within treR at 492.148 kb on - strand, within treR at 492.320 kb on + strand at 492.320 kb on + strand at 492.320 kb on + strand at 492.321 kb on - strand at 492.321 kb on - strand at 492.363 kb on + strand at 492.364 kb on - strand at 492.377 kb on + strand at 492.377 kb on + strand at 492.430 kb on - strand at 492.451 kb on - strand at 492.451 kb on - strand at 492.453 kb on + strand at 492.453 kb on + strand at 492.454 kb on - strand at 492.586 kb on + strand, within treB at 492.586 kb on + strand, within treB at 492.586 kb on + strand, within treB at 492.587 kb on - strand, within treB at 492.587 kb on - strand, within treB at 492.587 kb on - strand, within treB at 492.587 kb on - strand, within treB at 492.587 kb on - strand, within treB at 492.589 kb on + strand, within treB at 492.590 kb on - strand, within treB at 492.590 kb on - strand, within treB at 492.641 kb on + strand, within treB at 492.663 kb on + strand, within treB at 492.664 kb on - strand, within treB at 492.811 kb on + strand, within treB at 492.812 kb on - strand, within treB at 492.871 kb on + strand, within treB at 492.980 kb on - strand, within treB at 493.045 kb on + strand, within treB at 493.111 kb on - strand, within treB at 493.135 kb on + strand, within treB at 493.135 kb on + strand, within treB at 493.135 kb on + strand, within treB at 493.136 kb on - strand, within treB at 493.241 kb on + strand, within treB at 493.300 kb on + strand, within treB at 493.325 kb on + strand, within treB at 493.325 kb on + strand, within treB at 493.325 kb on + strand, within treB at 493.377 kb on + strand, within treB at 493.441 kb on - strand, within treB at 493.441 kb on - strand, within treB at 493.528 kb on + strand, within treB at 493.528 kb on + strand, within treB at 493.529 kb on - strand, within treB at 493.727 kb on + strand at 493.727 kb on + strand at 493.727 kb on + strand at 493.727 kb on + strand at 493.740 kb on + strand at 493.740 kb on + strand at 493.740 kb on + strand at 493.741 kb on - strand at 493.741 kb on - strand at 493.745 kb on - strand at 493.757 kb on - strand at 493.828 kb on + strand at 493.840 kb on + strand at 493.875 kb on - strand at 493.883 kb on + strand at 493.955 kb on + strand at 494.042 kb on + strand, within treC at 494.143 kb on + strand, within treC at 494.149 kb on + strand, within treC at 494.309 kb on + strand, within treC at 494.775 kb on + strand, within treC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 491,504 + treR MCAODC_02395 0.22 +1.1 491,562 + treR MCAODC_02395 0.28 -0.3 491,562 + treR MCAODC_02395 0.28 +0.3 491,562 + treR MCAODC_02395 0.28 +0.4 491,563 - treR MCAODC_02395 0.28 +0.7 491,563 - treR MCAODC_02395 0.28 -0.3 491,575 - treR MCAODC_02395 0.29 -0.9 491,575 - treR MCAODC_02395 0.29 +0.9 491,575 - treR MCAODC_02395 0.29 -0.0 491,614 + treR MCAODC_02395 0.33 +0.2 491,615 - treR MCAODC_02395 0.33 +0.2 491,615 - treR MCAODC_02395 0.33 -3.4 491,648 + treR MCAODC_02395 0.37 -1.2 491,652 - treR MCAODC_02395 0.37 +0.7 491,662 + treR MCAODC_02395 0.38 -0.7 491,662 + treR MCAODC_02395 0.38 -0.4 491,663 - treR MCAODC_02395 0.39 +1.0 491,663 - treR MCAODC_02395 0.39 +1.1 491,687 - treR MCAODC_02395 0.41 +1.5 491,687 - treR MCAODC_02395 0.41 -2.9 491,767 - treR MCAODC_02395 0.49 -1.2 491,808 + treR MCAODC_02395 0.54 -0.7 491,809 - treR MCAODC_02395 0.54 +0.5 491,825 + treR MCAODC_02395 0.56 +0.3 491,825 + treR MCAODC_02395 0.56 +1.2 491,825 + treR MCAODC_02395 0.56 +0.7 491,826 - treR MCAODC_02395 0.56 +0.6 491,826 - treR MCAODC_02395 0.56 +2.8 491,826 - treR MCAODC_02395 0.56 +1.4 491,826 - treR MCAODC_02395 0.56 +0.3 491,826 - treR MCAODC_02395 0.56 +0.3 491,826 - treR MCAODC_02395 0.56 +0.3 491,828 + treR MCAODC_02395 0.56 -0.1 491,828 + treR MCAODC_02395 0.56 +0.9 491,890 - treR MCAODC_02395 0.62 +0.4 491,913 - treR MCAODC_02395 0.65 -0.6 491,948 + treR MCAODC_02395 0.69 -0.5 491,948 + treR MCAODC_02395 0.69 +0.3 491,949 - treR MCAODC_02395 0.69 +0.7 491,962 - treR MCAODC_02395 0.70 +0.7 491,971 + treR MCAODC_02395 0.71 -1.9 491,971 + treR MCAODC_02395 0.71 +1.0 491,971 + treR MCAODC_02395 0.71 -0.3 491,972 - treR MCAODC_02395 0.71 +0.3 491,972 - treR MCAODC_02395 0.71 -0.0 491,984 + treR MCAODC_02395 0.72 +0.8 491,997 - treR MCAODC_02395 0.74 +0.1 492,004 + treR MCAODC_02395 0.74 +0.7 492,005 - treR MCAODC_02395 0.75 -1.6 492,041 + treR MCAODC_02395 0.78 -0.0 492,042 - treR MCAODC_02395 0.78 +0.3 492,042 - treR MCAODC_02395 0.78 -1.6 492,042 - treR MCAODC_02395 0.78 -1.2 492,042 - treR MCAODC_02395 0.78 -1.0 492,046 - treR MCAODC_02395 0.79 +0.7 492,046 - treR MCAODC_02395 0.79 +0.5 492,046 - treR MCAODC_02395 0.79 +0.1 492,046 - treR MCAODC_02395 0.79 +0.8 492,046 - treR MCAODC_02395 0.79 +0.2 492,095 + treR MCAODC_02395 0.84 +0.4 492,095 + treR MCAODC_02395 0.84 +0.3 492,096 - treR MCAODC_02395 0.84 +0.7 492,096 - treR MCAODC_02395 0.84 -0.6 492,096 - treR MCAODC_02395 0.84 -0.5 492,137 - treR MCAODC_02395 0.89 -0.7 492,148 - treR MCAODC_02395 0.90 -0.1 492,320 + -0.0 492,320 + -1.8 492,320 + +0.7 492,321 - +0.5 492,321 - -1.0 492,363 + -1.9 492,364 - -1.1 492,377 + -0.2 492,377 + +0.0 492,430 - +0.2 492,451 - -0.5 492,451 - +0.6 492,453 + +0.0 492,453 + +0.7 492,454 - -0.0 492,586 + treB MCAODC_02400 0.16 +0.3 492,586 + treB MCAODC_02400 0.16 -0.6 492,586 + treB MCAODC_02400 0.16 +0.4 492,587 - treB MCAODC_02400 0.16 +0.1 492,587 - treB MCAODC_02400 0.16 -0.0 492,587 - treB MCAODC_02400 0.16 +0.2 492,587 - treB MCAODC_02400 0.16 -1.6 492,587 - treB MCAODC_02400 0.16 -0.2 492,589 + treB MCAODC_02400 0.16 +2.1 492,590 - treB MCAODC_02400 0.16 +0.1 492,590 - treB MCAODC_02400 0.16 +0.4 492,641 + treB MCAODC_02400 0.19 +0.5 492,663 + treB MCAODC_02400 0.21 +0.3 492,664 - treB MCAODC_02400 0.21 -0.8 492,811 + treB MCAODC_02400 0.31 -0.0 492,812 - treB MCAODC_02400 0.32 -2.0 492,871 + treB MCAODC_02400 0.36 +0.1 492,980 - treB MCAODC_02400 0.43 -0.2 493,045 + treB MCAODC_02400 0.48 +0.6 493,111 - treB MCAODC_02400 0.53 -0.8 493,135 + treB MCAODC_02400 0.54 -1.1 493,135 + treB MCAODC_02400 0.54 +0.2 493,135 + treB MCAODC_02400 0.54 -0.6 493,136 - treB MCAODC_02400 0.54 +0.3 493,241 + treB MCAODC_02400 0.62 -0.5 493,300 + treB MCAODC_02400 0.66 +2.0 493,325 + treB MCAODC_02400 0.68 -0.7 493,325 + treB MCAODC_02400 0.68 +0.0 493,325 + treB MCAODC_02400 0.68 -0.6 493,377 + treB MCAODC_02400 0.71 -0.2 493,441 - treB MCAODC_02400 0.76 +0.9 493,441 - treB MCAODC_02400 0.76 +0.1 493,528 + treB MCAODC_02400 0.82 -0.3 493,528 + treB MCAODC_02400 0.82 +1.0 493,529 - treB MCAODC_02400 0.82 -0.2 493,727 + -2.1 493,727 + -3.1 493,727 + +0.4 493,727 + +0.1 493,740 + +0.0 493,740 + -1.4 493,740 + -0.1 493,741 - +0.5 493,741 - +0.8 493,745 - +0.4 493,757 - +0.4 493,828 + -1.7 493,840 + -0.5 493,875 - -2.4 493,883 + +2.3 493,955 + -0.1 494,042 + treC MCAODC_02405 0.12 +0.3 494,143 + treC MCAODC_02405 0.19 +2.3 494,149 + treC MCAODC_02405 0.19 -0.5 494,309 + treC MCAODC_02405 0.29 -1.1 494,775 + treC MCAODC_02405 0.57 -1.3
Or see this region's nucleotide sequence