Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ettA and MCAODC_01700 are separated by 106 nucleotides MCAODC_01700 and nadR are separated by 33 nucleotides nadR and radA are separated by 20 nucleotides
MCAODC_01690: ettA - energy-dependent translational throttle protein EttA, at 328,320 to 329,987
ettA
MCAODC_01700: MCAODC_01700 - Lipid A biosynthesis protein, at 330,094 to 330,261
_01700
MCAODC_01705: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 330,295 to 331,527
nadR
MCAODC_01710: radA - DNA repair protein RadA, at 331,548 to 332,930
radA
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.316 kb on + strand, within ettA at 329.421 kb on - strand, within ettA at 329.558 kb on + strand, within ettA at 329.598 kb on + strand, within ettA at 329.599 kb on - strand, within ettA at 329.873 kb on + strand at 329.874 kb on - strand at 329.874 kb on - strand at 329.894 kb on + strand at 329.894 kb on + strand at 329.967 kb on + strand at 329.967 kb on + strand at 329.985 kb on + strand at 329.985 kb on + strand at 329.985 kb on + strand at 329.985 kb on + strand at 329.986 kb on - strand at 329.986 kb on - strand at 330.073 kb on + strand at 330.145 kb on + strand, within MCAODC_01700 at 330.146 kb on - strand, within MCAODC_01700 at 330.146 kb on - strand, within MCAODC_01700 at 330.156 kb on + strand, within MCAODC_01700 at 330.156 kb on + strand, within MCAODC_01700 at 330.156 kb on + strand, within MCAODC_01700 at 330.297 kb on - strand at 330.356 kb on + strand at 330.357 kb on - strand at 330.460 kb on + strand, within nadR at 330.461 kb on - strand, within nadR at 330.563 kb on + strand, within nadR at 330.728 kb on + strand, within nadR at 330.768 kb on + strand, within nadR at 330.831 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.864 kb on + strand, within nadR at 330.865 kb on - strand, within nadR at 330.865 kb on - strand, within nadR at 330.866 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.918 kb on + strand, within nadR at 330.919 kb on - strand, within nadR at 330.919 kb on - strand, within nadR at 330.924 kb on + strand, within nadR at 330.924 kb on + strand, within nadR at 330.969 kb on + strand, within nadR at 330.969 kb on + strand, within nadR at 330.970 kb on - strand, within nadR at 330.970 kb on - strand, within nadR at 330.970 kb on - strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.971 kb on + strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 330.972 kb on - strand, within nadR at 331.048 kb on - strand, within nadR at 331.131 kb on - strand, within nadR at 331.131 kb on - strand, within nadR at 331.134 kb on + strand, within nadR at 331.242 kb on + strand, within nadR at 331.243 kb on - strand, within nadR at 331.243 kb on - strand, within nadR at 331.243 kb on - strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.283 kb on + strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.284 kb on - strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.287 kb on + strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.288 kb on - strand, within nadR at 331.296 kb on + strand, within nadR at 331.308 kb on - strand, within nadR at 331.423 kb on + strand at 331.423 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.432 kb on + strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.433 kb on - strand at 331.436 kb on + strand at 331.465 kb on + strand at 331.465 kb on + strand at 331.466 kb on - strand at 331.527 kb on + strand at 331.527 kb on + strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.528 kb on - strand at 331.540 kb on - strand at 331.549 kb on + strand at 331.549 kb on + strand at 331.549 kb on + strand at 331.550 kb on - strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.551 kb on + strand at 331.552 kb on - strand at 331.552 kb on - strand at 332.202 kb on + strand, within radA at 332.203 kb on - strand, within radA at 332.203 kb on - strand, within radA at 332.269 kb on - strand, within radA at 332.323 kb on + strand, within radA at 332.323 kb on + strand, within radA at 332.324 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.355 kb on - strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.370 kb on + strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.371 kb on - strand, within radA at 332.381 kb on + strand, within radA at 332.382 kb on - strand, within radA at 332.382 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.407 kb on - strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.474 kb on + strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA at 332.475 kb on - strand, within radA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 329,316 + ettA MCAODC_01690 0.60 -1.2 329,421 - ettA MCAODC_01690 0.66 -0.6 329,558 + ettA MCAODC_01690 0.74 -0.1 329,598 + ettA MCAODC_01690 0.77 +0.2 329,599 - ettA MCAODC_01690 0.77 +0.3 329,873 + +0.1 329,874 - -0.4 329,874 - -0.1 329,894 + +0.9 329,894 + -0.1 329,967 + -0.2 329,967 + -1.4 329,985 + +1.0 329,985 + +0.3 329,985 + -0.8 329,985 + +0.8 329,986 - +0.6 329,986 - -0.3 330,073 + +0.3 330,145 + MCAODC_01700 0.30 +0.3 330,146 - MCAODC_01700 0.31 -0.9 330,146 - MCAODC_01700 0.31 +0.4 330,156 + MCAODC_01700 0.37 +0.3 330,156 + MCAODC_01700 0.37 +0.1 330,156 + MCAODC_01700 0.37 -0.3 330,297 - -0.0 330,356 + -1.5 330,357 - -0.1 330,460 + nadR MCAODC_01705 0.13 +0.3 330,461 - nadR MCAODC_01705 0.13 -0.2 330,563 + nadR MCAODC_01705 0.22 -0.8 330,728 + nadR MCAODC_01705 0.35 +1.4 330,768 + nadR MCAODC_01705 0.38 -0.4 330,831 + nadR MCAODC_01705 0.43 +0.7 330,864 + nadR MCAODC_01705 0.46 -0.6 330,864 + nadR MCAODC_01705 0.46 +1.4 330,864 + nadR MCAODC_01705 0.46 -0.8 330,865 - nadR MCAODC_01705 0.46 +0.6 330,865 - nadR MCAODC_01705 0.46 -0.7 330,866 + nadR MCAODC_01705 0.46 -0.1 330,918 + nadR MCAODC_01705 0.51 -0.8 330,918 + nadR MCAODC_01705 0.51 -0.2 330,918 + nadR MCAODC_01705 0.51 +1.3 330,918 + nadR MCAODC_01705 0.51 +0.1 330,919 - nadR MCAODC_01705 0.51 -1.8 330,919 - nadR MCAODC_01705 0.51 +0.8 330,924 + nadR MCAODC_01705 0.51 -0.4 330,924 + nadR MCAODC_01705 0.51 -0.0 330,969 + nadR MCAODC_01705 0.55 -2.2 330,969 + nadR MCAODC_01705 0.55 +0.2 330,970 - nadR MCAODC_01705 0.55 -1.2 330,970 - nadR MCAODC_01705 0.55 -0.2 330,970 - nadR MCAODC_01705 0.55 -0.5 330,971 + nadR MCAODC_01705 0.55 +2.7 330,971 + nadR MCAODC_01705 0.55 +0.1 330,971 + nadR MCAODC_01705 0.55 -0.0 330,971 + nadR MCAODC_01705 0.55 +0.6 330,971 + nadR MCAODC_01705 0.55 +0.2 330,972 - nadR MCAODC_01705 0.55 -0.5 330,972 - nadR MCAODC_01705 0.55 +0.2 330,972 - nadR MCAODC_01705 0.55 +1.0 330,972 - nadR MCAODC_01705 0.55 -2.2 330,972 - nadR MCAODC_01705 0.55 +0.4 330,972 - nadR MCAODC_01705 0.55 -1.8 331,048 - nadR MCAODC_01705 0.61 -0.5 331,131 - nadR MCAODC_01705 0.68 +0.3 331,131 - nadR MCAODC_01705 0.68 -0.5 331,134 + nadR MCAODC_01705 0.68 +0.4 331,242 + nadR MCAODC_01705 0.77 -0.8 331,243 - nadR MCAODC_01705 0.77 +0.9 331,243 - nadR MCAODC_01705 0.77 +0.1 331,243 - nadR MCAODC_01705 0.77 +0.4 331,283 + nadR MCAODC_01705 0.80 +1.0 331,283 + nadR MCAODC_01705 0.80 +0.6 331,283 + nadR MCAODC_01705 0.80 +0.7 331,283 + nadR MCAODC_01705 0.80 -0.1 331,283 + nadR MCAODC_01705 0.80 +0.5 331,284 - nadR MCAODC_01705 0.80 -0.6 331,284 - nadR MCAODC_01705 0.80 +0.9 331,284 - nadR MCAODC_01705 0.80 -1.8 331,284 - nadR MCAODC_01705 0.80 +1.0 331,284 - nadR MCAODC_01705 0.80 +1.7 331,284 - nadR MCAODC_01705 0.80 +0.1 331,284 - nadR MCAODC_01705 0.80 +0.2 331,284 - nadR MCAODC_01705 0.80 -0.1 331,284 - nadR MCAODC_01705 0.80 -0.5 331,287 + nadR MCAODC_01705 0.80 -0.4 331,287 + nadR MCAODC_01705 0.80 +0.2 331,287 + nadR MCAODC_01705 0.80 +0.1 331,287 + nadR MCAODC_01705 0.80 +1.1 331,287 + nadR MCAODC_01705 0.80 +0.0 331,288 - nadR MCAODC_01705 0.81 -0.5 331,288 - nadR MCAODC_01705 0.81 +0.9 331,288 - nadR MCAODC_01705 0.81 -0.3 331,288 - nadR MCAODC_01705 0.81 -0.2 331,288 - nadR MCAODC_01705 0.81 +1.1 331,296 + nadR MCAODC_01705 0.81 -0.1 331,308 - nadR MCAODC_01705 0.82 +0.6 331,423 + -0.4 331,423 + +0.7 331,432 + -0.7 331,432 + +0.6 331,432 + +0.2 331,432 + +0.5 331,433 - -0.3 331,433 - +1.1 331,433 - -0.9 331,433 - -0.3 331,433 - -1.5 331,436 + +1.6 331,465 + -0.4 331,465 + +0.1 331,466 - -1.3 331,527 + -0.5 331,527 + -0.4 331,528 - +0.5 331,528 - +0.4 331,528 - +0.9 331,528 - +0.8 331,528 - -1.2 331,540 - -0.8 331,549 + +0.4 331,549 + +0.1 331,549 + +0.1 331,550 - +1.1 331,551 + -0.6 331,551 + -2.5 331,551 + +0.5 331,551 + -0.2 331,551 + +0.6 331,552 - -0.1 331,552 - +0.0 332,202 + radA MCAODC_01710 0.47 -0.5 332,203 - radA MCAODC_01710 0.47 -0.7 332,203 - radA MCAODC_01710 0.47 +0.4 332,269 - radA MCAODC_01710 0.52 +0.8 332,323 + radA MCAODC_01710 0.56 +2.3 332,323 + radA MCAODC_01710 0.56 +0.9 332,324 - radA MCAODC_01710 0.56 +0.5 332,355 - radA MCAODC_01710 0.58 -2.1 332,355 - radA MCAODC_01710 0.58 +1.4 332,370 + radA MCAODC_01710 0.59 -0.1 332,370 + radA MCAODC_01710 0.59 +1.2 332,370 + radA MCAODC_01710 0.59 +1.1 332,370 + radA MCAODC_01710 0.59 +0.3 332,371 - radA MCAODC_01710 0.60 -0.4 332,371 - radA MCAODC_01710 0.60 -0.7 332,371 - radA MCAODC_01710 0.60 +0.4 332,371 - radA MCAODC_01710 0.60 -0.6 332,381 + radA MCAODC_01710 0.60 +0.2 332,382 - radA MCAODC_01710 0.60 +0.9 332,382 - radA MCAODC_01710 0.60 -0.4 332,407 - radA MCAODC_01710 0.62 -0.3 332,407 - radA MCAODC_01710 0.62 -0.2 332,474 + radA MCAODC_01710 0.67 -1.0 332,474 + radA MCAODC_01710 0.67 +0.5 332,474 + radA MCAODC_01710 0.67 +0.8 332,474 + radA MCAODC_01710 0.67 +0.5 332,475 - radA MCAODC_01710 0.67 -0.5 332,475 - radA MCAODC_01710 0.67 +0.9 332,475 - radA MCAODC_01710 0.67 +0.4 332,475 - radA MCAODC_01710 0.67 +0.6
Or see this region's nucleotide sequence