Experiment: UV exposure at 150J/m2 for 10 seconds
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03150 and MPMX26_03151 are separated by 50 nucleotides MPMX26_03151 and MPMX26_03152 are separated by 161 nucleotides MPMX26_03152 and MPMX26_03153 are separated by 171 nucleotides MPMX26_03153 and MPMX26_03154 are separated by 119 nucleotides
MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877
_03150
MPMX26_03151: MPMX26_03151 - hypothetical protein, at 9,928 to 10,365
_03151
MPMX26_03152: MPMX26_03152 - IS6 family transposase IS1006, at 10,527 to 11,231
_03152
MPMX26_03153: MPMX26_03153 - Biofilm growth-associated repressor, at 11,403 to 11,714
_03153
MPMX26_03154: MPMX26_03154 - hypothetical protein, at 11,834 to 12,250
_03154
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1 at 9.549 kb on + strand, within MPMX26_03150 at 9.556 kb on + strand, within MPMX26_03150 at 9.682 kb on + strand at 9.682 kb on + strand at 9.682 kb on + strand at 9.682 kb on + strand at 9.694 kb on + strand at 9.701 kb on + strand at 9.742 kb on + strand at 9.764 kb on - strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 10.001 kb on + strand, within MPMX26_03151 at 10.053 kb on + strand, within MPMX26_03151 at 10.174 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.286 kb on + strand, within MPMX26_03151 at 10.286 kb on - strand, within MPMX26_03151 at 10.340 kb on + strand at 10.347 kb on + strand at 10.412 kb on - strand at 10.478 kb on - strand at 10.789 kb on + strand, within MPMX26_03152 at 10.789 kb on + strand, within MPMX26_03152 at 10.794 kb on + strand, within MPMX26_03152 at 10.943 kb on + strand, within MPMX26_03152 at 10.986 kb on + strand, within MPMX26_03152 at 11.047 kb on - strand, within MPMX26_03152 at 11.049 kb on + strand, within MPMX26_03152 at 11.085 kb on - strand, within MPMX26_03152 at 11.257 kb on + strand at 11.408 kb on - strand at 11.408 kb on - strand at 11.413 kb on - strand at 11.415 kb on + strand at 11.421 kb on - strand at 11.421 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.423 kb on - strand at 11.431 kb on + strand at 11.450 kb on - strand, within MPMX26_03153 at 11.450 kb on - strand, within MPMX26_03153 at 11.488 kb on - strand, within MPMX26_03153 at 11.493 kb on - strand, within MPMX26_03153 at 11.514 kb on - strand, within MPMX26_03153 at 11.514 kb on - strand, within MPMX26_03153 at 11.522 kb on + strand, within MPMX26_03153 at 11.530 kb on - strand, within MPMX26_03153 at 11.530 kb on - strand, within MPMX26_03153 at 11.530 kb on - strand, within MPMX26_03153 at 11.597 kb on - strand, within MPMX26_03153 at 11.636 kb on - strand, within MPMX26_03153 at 11.640 kb on - strand, within MPMX26_03153 at 11.834 kb on + strand at 11.834 kb on + strand at 11.891 kb on + strand, within MPMX26_03154 at 11.891 kb on + strand, within MPMX26_03154 at 11.903 kb on + strand, within MPMX26_03154 at 11.945 kb on + strand, within MPMX26_03154 at 11.965 kb on + strand, within MPMX26_03154 at 11.965 kb on + strand, within MPMX26_03154 at 11.975 kb on + strand, within MPMX26_03154 at 12.028 kb on + strand, within MPMX26_03154 at 12.037 kb on + strand, within MPMX26_03154 at 12.059 kb on + strand, within MPMX26_03154 at 12.083 kb on + strand, within MPMX26_03154 at 12.113 kb on + strand, within MPMX26_03154 at 12.113 kb on + strand, within MPMX26_03154 at 12.113 kb on + strand, within MPMX26_03154 at 12.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds remove 9,549 + MPMX26_03150 0.89 +1.1 9,556 + MPMX26_03150 0.89 -0.1 9,682 + -0.5 9,682 + +0.1 9,682 + -0.2 9,682 + +0.5 9,694 + -0.4 9,701 + -0.2 9,742 + -0.1 9,764 - +0.3 9,970 + +0.0 9,970 + -0.0 9,970 + -0.1 9,970 + -0.2 9,970 + -0.1 9,970 + +0.5 10,001 + MPMX26_03151 0.17 +0.8 10,053 + MPMX26_03151 0.29 -0.4 10,174 + MPMX26_03151 0.56 +0.5 10,194 + MPMX26_03151 0.61 -0.1 10,194 + MPMX26_03151 0.61 +0.4 10,194 + MPMX26_03151 0.61 +0.0 10,194 + MPMX26_03151 0.61 +0.1 10,194 + MPMX26_03151 0.61 +0.3 10,286 + MPMX26_03151 0.82 -0.3 10,286 - MPMX26_03151 0.82 -1.5 10,340 + +0.6 10,347 + -0.4 10,412 - -0.5 10,478 - +0.8 10,789 + MPMX26_03152 0.37 +0.5 10,789 + MPMX26_03152 0.37 +0.6 10,794 + MPMX26_03152 0.38 +0.4 10,943 + MPMX26_03152 0.59 +0.9 10,986 + MPMX26_03152 0.65 -0.1 11,047 - MPMX26_03152 0.74 -0.3 11,049 + MPMX26_03152 0.74 +0.3 11,085 - MPMX26_03152 0.79 +0.3 11,257 + -0.5 11,408 - -0.5 11,408 - +0.5 11,413 - -0.6 11,415 + -0.0 11,421 - +1.4 11,421 - +0.1 11,423 - +0.4 11,423 - -0.1 11,423 - +0.2 11,423 - -0.2 11,423 - -0.1 11,423 - +0.5 11,423 - -2.3 11,423 - +0.2 11,423 - -0.6 11,423 - +0.0 11,423 - -0.6 11,423 - -0.2 11,423 - +0.3 11,423 - -0.1 11,431 + +1.3 11,450 - MPMX26_03153 0.15 -0.6 11,450 - MPMX26_03153 0.15 +0.4 11,488 - MPMX26_03153 0.27 -0.2 11,493 - MPMX26_03153 0.29 +0.1 11,514 - MPMX26_03153 0.36 +0.2 11,514 - MPMX26_03153 0.36 +0.9 11,522 + MPMX26_03153 0.38 +0.3 11,530 - MPMX26_03153 0.41 -0.2 11,530 - MPMX26_03153 0.41 -1.0 11,530 - MPMX26_03153 0.41 +0.2 11,597 - MPMX26_03153 0.62 -0.5 11,636 - MPMX26_03153 0.75 -0.4 11,640 - MPMX26_03153 0.76 +0.5 11,834 + -0.9 11,834 + -1.3 11,891 + MPMX26_03154 0.14 +0.3 11,891 + MPMX26_03154 0.14 +0.2 11,903 + MPMX26_03154 0.17 +0.1 11,945 + MPMX26_03154 0.27 -1.0 11,965 + MPMX26_03154 0.31 +0.3 11,965 + MPMX26_03154 0.31 +0.0 11,975 + MPMX26_03154 0.34 +0.5 12,028 + MPMX26_03154 0.47 -1.5 12,037 + MPMX26_03154 0.49 -0.0 12,059 + MPMX26_03154 0.54 -0.5 12,083 + MPMX26_03154 0.60 +0.8 12,113 + MPMX26_03154 0.67 +0.1 12,113 + MPMX26_03154 0.67 +0.4 12,113 + MPMX26_03154 0.67 -0.0 12,213 + -1.4
Or see this region's nucleotide sequence