Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03152

Experiment: UV exposure at 150J/m2 for 10 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_03150 and MPMX26_03151 are separated by 50 nucleotidesMPMX26_03151 and MPMX26_03152 are separated by 161 nucleotidesMPMX26_03152 and MPMX26_03153 are separated by 171 nucleotidesMPMX26_03153 and MPMX26_03154 are separated by 119 nucleotides MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877 _03150 MPMX26_03151: MPMX26_03151 - hypothetical protein, at 9,928 to 10,365 _03151 MPMX26_03152: MPMX26_03152 - IS6 family transposase IS1006, at 10,527 to 11,231 _03152 MPMX26_03153: MPMX26_03153 - Biofilm growth-associated repressor, at 11,403 to 11,714 _03153 MPMX26_03154: MPMX26_03154 - hypothetical protein, at 11,834 to 12,250 _03154 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 9.549 kb on + strand, within MPMX26_03150at 9.556 kb on + strand, within MPMX26_03150at 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.694 kb on + strandat 9.701 kb on + strandat 9.742 kb on + strandat 9.764 kb on - strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 10.001 kb on + strand, within MPMX26_03151at 10.053 kb on + strand, within MPMX26_03151at 10.174 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.286 kb on + strand, within MPMX26_03151at 10.286 kb on - strand, within MPMX26_03151at 10.340 kb on + strandat 10.347 kb on + strandat 10.412 kb on - strandat 10.478 kb on - strandat 10.789 kb on + strand, within MPMX26_03152at 10.789 kb on + strand, within MPMX26_03152at 10.794 kb on + strand, within MPMX26_03152at 10.943 kb on + strand, within MPMX26_03152at 10.986 kb on + strand, within MPMX26_03152at 11.047 kb on - strand, within MPMX26_03152at 11.049 kb on + strand, within MPMX26_03152at 11.085 kb on - strand, within MPMX26_03152at 11.257 kb on + strandat 11.408 kb on - strandat 11.408 kb on - strandat 11.413 kb on - strandat 11.415 kb on + strandat 11.421 kb on - strandat 11.421 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.423 kb on - strandat 11.431 kb on + strandat 11.450 kb on - strand, within MPMX26_03153at 11.450 kb on - strand, within MPMX26_03153at 11.488 kb on - strand, within MPMX26_03153at 11.493 kb on - strand, within MPMX26_03153at 11.514 kb on - strand, within MPMX26_03153at 11.514 kb on - strand, within MPMX26_03153at 11.522 kb on + strand, within MPMX26_03153at 11.530 kb on - strand, within MPMX26_03153at 11.530 kb on - strand, within MPMX26_03153at 11.530 kb on - strand, within MPMX26_03153at 11.597 kb on - strand, within MPMX26_03153at 11.636 kb on - strand, within MPMX26_03153at 11.640 kb on - strand, within MPMX26_03153at 11.834 kb on + strandat 11.834 kb on + strandat 11.891 kb on + strand, within MPMX26_03154at 11.891 kb on + strand, within MPMX26_03154at 11.903 kb on + strand, within MPMX26_03154at 11.945 kb on + strand, within MPMX26_03154at 11.965 kb on + strand, within MPMX26_03154at 11.965 kb on + strand, within MPMX26_03154at 11.975 kb on + strand, within MPMX26_03154at 12.028 kb on + strand, within MPMX26_03154at 12.037 kb on + strand, within MPMX26_03154at 12.059 kb on + strand, within MPMX26_03154at 12.083 kb on + strand, within MPMX26_03154at 12.113 kb on + strand, within MPMX26_03154at 12.113 kb on + strand, within MPMX26_03154at 12.113 kb on + strand, within MPMX26_03154at 12.213 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
remove
9,549 + MPMX26_03150 0.89 +1.1
9,556 + MPMX26_03150 0.89 -0.1
9,682 + -0.5
9,682 + +0.1
9,682 + -0.2
9,682 + +0.5
9,694 + -0.4
9,701 + -0.2
9,742 + -0.1
9,764 - +0.3
9,970 + +0.0
9,970 + -0.0
9,970 + -0.1
9,970 + -0.2
9,970 + -0.1
9,970 + +0.5
10,001 + MPMX26_03151 0.17 +0.8
10,053 + MPMX26_03151 0.29 -0.4
10,174 + MPMX26_03151 0.56 +0.5
10,194 + MPMX26_03151 0.61 -0.1
10,194 + MPMX26_03151 0.61 +0.4
10,194 + MPMX26_03151 0.61 +0.0
10,194 + MPMX26_03151 0.61 +0.1
10,194 + MPMX26_03151 0.61 +0.3
10,286 + MPMX26_03151 0.82 -0.3
10,286 - MPMX26_03151 0.82 -1.5
10,340 + +0.6
10,347 + -0.4
10,412 - -0.5
10,478 - +0.8
10,789 + MPMX26_03152 0.37 +0.5
10,789 + MPMX26_03152 0.37 +0.6
10,794 + MPMX26_03152 0.38 +0.4
10,943 + MPMX26_03152 0.59 +0.9
10,986 + MPMX26_03152 0.65 -0.1
11,047 - MPMX26_03152 0.74 -0.3
11,049 + MPMX26_03152 0.74 +0.3
11,085 - MPMX26_03152 0.79 +0.3
11,257 + -0.5
11,408 - -0.5
11,408 - +0.5
11,413 - -0.6
11,415 + -0.0
11,421 - +1.4
11,421 - +0.1
11,423 - +0.4
11,423 - -0.1
11,423 - +0.2
11,423 - -0.2
11,423 - -0.1
11,423 - +0.5
11,423 - -2.3
11,423 - +0.2
11,423 - -0.6
11,423 - +0.0
11,423 - -0.6
11,423 - -0.2
11,423 - +0.3
11,423 - -0.1
11,431 + +1.3
11,450 - MPMX26_03153 0.15 -0.6
11,450 - MPMX26_03153 0.15 +0.4
11,488 - MPMX26_03153 0.27 -0.2
11,493 - MPMX26_03153 0.29 +0.1
11,514 - MPMX26_03153 0.36 +0.2
11,514 - MPMX26_03153 0.36 +0.9
11,522 + MPMX26_03153 0.38 +0.3
11,530 - MPMX26_03153 0.41 -0.2
11,530 - MPMX26_03153 0.41 -1.0
11,530 - MPMX26_03153 0.41 +0.2
11,597 - MPMX26_03153 0.62 -0.5
11,636 - MPMX26_03153 0.75 -0.4
11,640 - MPMX26_03153 0.76 +0.5
11,834 + -0.9
11,834 + -1.3
11,891 + MPMX26_03154 0.14 +0.3
11,891 + MPMX26_03154 0.14 +0.2
11,903 + MPMX26_03154 0.17 +0.1
11,945 + MPMX26_03154 0.27 -1.0
11,965 + MPMX26_03154 0.31 +0.3
11,965 + MPMX26_03154 0.31 +0.0
11,975 + MPMX26_03154 0.34 +0.5
12,028 + MPMX26_03154 0.47 -1.5
12,037 + MPMX26_03154 0.49 -0.0
12,059 + MPMX26_03154 0.54 -0.5
12,083 + MPMX26_03154 0.60 +0.8
12,113 + MPMX26_03154 0.67 +0.1
12,113 + MPMX26_03154 0.67 +0.4
12,113 + MPMX26_03154 0.67 -0.0
12,213 + -1.4

Or see this region's nucleotide sequence