Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03007

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03006 and MPMX26_03007 are separated by 296 nucleotidesMPMX26_03007 and MPMX26_03008 are separated by 111 nucleotides MPMX26_03006: MPMX26_03006 - 4-hydroxy-tetrahydrodipicolinate reductase, at 3,120,088 to 3,120,909 _03006 MPMX26_03007: MPMX26_03007 - hypothetical protein, at 3,121,206 to 3,121,565 _03007 MPMX26_03008: MPMX26_03008 - Chaperone protein DnaJ, at 3,121,677 to 3,122,789 _03008 Position (kb) 3121 3122Strain fitness (log2 ratio) -2 -1 0 1 2at 3121.200 kb on + strandat 3121.245 kb on - strand, within MPMX26_03007at 3121.338 kb on - strand, within MPMX26_03007at 3121.350 kb on - strand, within MPMX26_03007at 3121.352 kb on + strand, within MPMX26_03007at 3121.360 kb on - strand, within MPMX26_03007at 3121.381 kb on - strand, within MPMX26_03007at 3121.462 kb on - strand, within MPMX26_03007at 3121.462 kb on - strand, within MPMX26_03007at 3121.463 kb on - strand, within MPMX26_03007at 3121.473 kb on + strand, within MPMX26_03007at 3121.476 kb on - strand, within MPMX26_03007at 3121.486 kb on - strand, within MPMX26_03007at 3121.491 kb on - strand, within MPMX26_03007at 3121.496 kb on - strand, within MPMX26_03007at 3121.508 kb on - strand, within MPMX26_03007at 3121.539 kb on - strandat 3121.568 kb on - strandat 3121.568 kb on - strandat 3121.574 kb on - strandat 3121.603 kb on - strandat 3121.635 kb on - strandat 3121.640 kb on - strandat 3121.651 kb on - strandat 3121.686 kb on - strandat 3121.688 kb on - strandat 3121.723 kb on - strandat 3121.723 kb on - strandat 3121.728 kb on - strandat 3121.731 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.736 kb on - strandat 3121.747 kb on - strandat 3121.790 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3121.931 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.000 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.126 kb on - strand, within MPMX26_03008at 3122.177 kb on - strand, within MPMX26_03008

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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3,121,200 + +0.3
3,121,245 - MPMX26_03007 0.11 +0.5
3,121,338 - MPMX26_03007 0.37 -0.2
3,121,350 - MPMX26_03007 0.40 -1.0
3,121,352 + MPMX26_03007 0.41 -0.2
3,121,360 - MPMX26_03007 0.43 -2.0
3,121,381 - MPMX26_03007 0.49 +1.0
3,121,462 - MPMX26_03007 0.71 -1.1
3,121,462 - MPMX26_03007 0.71 +0.6
3,121,463 - MPMX26_03007 0.71 +0.4
3,121,473 + MPMX26_03007 0.74 +0.3
3,121,476 - MPMX26_03007 0.75 +0.8
3,121,486 - MPMX26_03007 0.78 -1.1
3,121,491 - MPMX26_03007 0.79 -1.7
3,121,496 - MPMX26_03007 0.81 -0.2
3,121,508 - MPMX26_03007 0.84 +0.7
3,121,539 - -0.9
3,121,568 - +1.8
3,121,568 - +1.8
3,121,574 - -0.4
3,121,603 - -0.0
3,121,635 - -0.5
3,121,640 - -0.3
3,121,651 - +0.1
3,121,686 - -2.0
3,121,688 - +0.1
3,121,723 - -1.2
3,121,723 - +0.3
3,121,728 - -1.2
3,121,731 - -1.7
3,121,736 - -0.4
3,121,736 - +0.3
3,121,736 - -0.2
3,121,736 - +0.6
3,121,736 - -0.8
3,121,736 - +0.5
3,121,736 - -0.6
3,121,747 - -0.2
3,121,790 - MPMX26_03008 0.10 -0.6
3,121,931 - MPMX26_03008 0.23 -0.2
3,121,931 - MPMX26_03008 0.23 +0.3
3,121,931 - MPMX26_03008 0.23 +0.3
3,122,000 - MPMX26_03008 0.29 -1.3
3,122,000 - MPMX26_03008 0.29 -1.3
3,122,000 - MPMX26_03008 0.29 -0.3
3,122,126 - MPMX26_03008 0.40 -1.0
3,122,126 - MPMX26_03008 0.40 -1.2
3,122,126 - MPMX26_03008 0.40 -1.2
3,122,177 - MPMX26_03008 0.45 +0.3

Or see this region's nucleotide sequence