Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02974

Experiment: UV exposure at 150J/m2 for 10 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02972 and MPMX26_02973 are separated by 12 nucleotidesMPMX26_02973 and MPMX26_02974 overlap by 8 nucleotidesMPMX26_02974 and MPMX26_02975 are separated by 21 nucleotides MPMX26_02972: MPMX26_02972 - Transcription antitermination protein NusB, at 3,087,851 to 3,088,300 _02972 MPMX26_02973: MPMX26_02973 - Thiamine-monophosphate kinase, at 3,088,313 to 3,089,230 _02973 MPMX26_02974: MPMX26_02974 - Phosphatidylglycerophosphatase A, at 3,089,223 to 3,089,729 _02974 MPMX26_02975: MPMX26_02975 - Bifunctional protein GlmU, at 3,089,751 to 3,091,115 _02975 Position (kb) 3089 3090Strain fitness (log2 ratio) -2 -1 0 1at 3088.295 kb on + strandat 3088.303 kb on + strandat 3089.250 kb on + strandat 3089.255 kb on + strandat 3089.255 kb on + strandat 3089.255 kb on + strandat 3089.262 kb on + strandat 3089.267 kb on + strandat 3089.267 kb on + strandat 3089.267 kb on + strandat 3089.354 kb on + strand, within MPMX26_02974at 3089.354 kb on + strand, within MPMX26_02974at 3089.354 kb on + strand, within MPMX26_02974at 3089.354 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.394 kb on + strand, within MPMX26_02974at 3089.402 kb on - strand, within MPMX26_02974at 3089.406 kb on + strand, within MPMX26_02974at 3089.406 kb on + strand, within MPMX26_02974at 3089.406 kb on + strand, within MPMX26_02974at 3089.448 kb on + strand, within MPMX26_02974at 3089.453 kb on + strand, within MPMX26_02974at 3089.463 kb on + strand, within MPMX26_02974at 3089.507 kb on + strand, within MPMX26_02974at 3089.507 kb on + strand, within MPMX26_02974at 3089.574 kb on + strand, within MPMX26_02974at 3089.603 kb on + strand, within MPMX26_02974at 3089.622 kb on + strand, within MPMX26_02974at 3089.678 kb on + strand, within MPMX26_02974at 3089.678 kb on + strand, within MPMX26_02974

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
remove
3,088,295 + +0.0
3,088,303 + +0.8
3,089,250 + -2.5
3,089,255 + -2.5
3,089,255 + -2.1
3,089,255 + -0.7
3,089,262 + -0.7
3,089,267 + -0.2
3,089,267 + -1.7
3,089,267 + -0.2
3,089,354 + MPMX26_02974 0.26 +0.3
3,089,354 + MPMX26_02974 0.26 -0.2
3,089,354 + MPMX26_02974 0.26 -0.5
3,089,354 + MPMX26_02974 0.26 -0.5
3,089,394 + MPMX26_02974 0.34 -0.5
3,089,394 + MPMX26_02974 0.34 -1.7
3,089,394 + MPMX26_02974 0.34 -0.7
3,089,394 + MPMX26_02974 0.34 -1.5
3,089,394 + MPMX26_02974 0.34 -1.6
3,089,394 + MPMX26_02974 0.34 -1.0
3,089,402 - MPMX26_02974 0.35 -1.0
3,089,406 + MPMX26_02974 0.36 -1.0
3,089,406 + MPMX26_02974 0.36 +0.8
3,089,406 + MPMX26_02974 0.36 -0.2
3,089,448 + MPMX26_02974 0.44 -1.6
3,089,453 + MPMX26_02974 0.45 -1.3
3,089,463 + MPMX26_02974 0.47 -0.7
3,089,507 + MPMX26_02974 0.56 -1.2
3,089,507 + MPMX26_02974 0.56 +1.4
3,089,574 + MPMX26_02974 0.69 +0.8
3,089,603 + MPMX26_02974 0.75 -0.2
3,089,622 + MPMX26_02974 0.79 -1.0
3,089,678 + MPMX26_02974 0.90 -0.5
3,089,678 + MPMX26_02974 0.90 -0.7

Or see this region's nucleotide sequence