Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01064

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01062 and MPMX26_01063 are separated by 204 nucleotidesMPMX26_01063 and MPMX26_01064 are separated by 59 nucleotidesMPMX26_01064 and MPMX26_01065 overlap by 4 nucleotides MPMX26_01062: MPMX26_01062 - hypothetical protein, at 1,127,303 to 1,128,304 _01062 MPMX26_01063: MPMX26_01063 - 50S ribosomal protein L31, at 1,128,509 to 1,128,733 _01063 MPMX26_01064: MPMX26_01064 - hypothetical protein, at 1,128,793 to 1,130,913 _01064 MPMX26_01065: MPMX26_01065 - Cyclic-di-GMP receptor FimW, at 1,130,910 to 1,132,664 _01065 Position (kb) 1128 1129 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1127.912 kb on + strand, within MPMX26_01062at 1127.982 kb on + strand, within MPMX26_01062at 1128.026 kb on + strand, within MPMX26_01062at 1128.077 kb on + strand, within MPMX26_01062at 1128.077 kb on + strand, within MPMX26_01062at 1128.077 kb on + strand, within MPMX26_01062at 1128.077 kb on + strand, within MPMX26_01062at 1128.082 kb on + strand, within MPMX26_01062at 1128.082 kb on + strand, within MPMX26_01062at 1128.092 kb on + strand, within MPMX26_01062at 1128.092 kb on + strand, within MPMX26_01062at 1128.140 kb on + strand, within MPMX26_01062at 1128.140 kb on + strand, within MPMX26_01062at 1128.140 kb on + strand, within MPMX26_01062at 1128.181 kb on + strand, within MPMX26_01062at 1128.260 kb on + strandat 1128.260 kb on + strandat 1128.260 kb on + strandat 1128.260 kb on + strandat 1128.260 kb on + strandat 1128.263 kb on - strandat 1128.277 kb on + strandat 1128.277 kb on + strandat 1128.587 kb on + strand, within MPMX26_01063at 1128.661 kb on + strand, within MPMX26_01063at 1128.712 kb on + strandat 1128.722 kb on + strandat 1128.810 kb on - strandat 1128.975 kb on - strandat 1129.032 kb on - strand, within MPMX26_01064at 1129.032 kb on - strand, within MPMX26_01064at 1129.090 kb on - strand, within MPMX26_01064at 1129.107 kb on - strand, within MPMX26_01064at 1129.189 kb on - strand, within MPMX26_01064at 1129.244 kb on - strand, within MPMX26_01064at 1129.294 kb on - strand, within MPMX26_01064at 1129.302 kb on - strand, within MPMX26_01064at 1129.438 kb on - strand, within MPMX26_01064at 1129.683 kb on - strand, within MPMX26_01064at 1129.683 kb on - strand, within MPMX26_01064at 1129.780 kb on - strand, within MPMX26_01064at 1129.785 kb on - strand, within MPMX26_01064at 1129.815 kb on - strand, within MPMX26_01064at 1129.815 kb on - strand, within MPMX26_01064at 1129.827 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.849 kb on - strand, within MPMX26_01064at 1129.864 kb on - strand, within MPMX26_01064at 1129.866 kb on - strand, within MPMX26_01064at 1129.912 kb on - strand, within MPMX26_01064at 1129.912 kb on - strand, within MPMX26_01064at 1129.951 kb on - strand, within MPMX26_01064at 1130.044 kb on - strand, within MPMX26_01064at 1130.062 kb on - strand, within MPMX26_01064at 1130.063 kb on - strand, within MPMX26_01064at 1130.091 kb on - strand, within MPMX26_01064at 1130.091 kb on - strand, within MPMX26_01064at 1130.091 kb on - strand, within MPMX26_01064at 1130.105 kb on - strand, within MPMX26_01064at 1130.154 kb on - strand, within MPMX26_01064at 1130.166 kb on - strand, within MPMX26_01064at 1130.260 kb on - strand, within MPMX26_01064at 1130.260 kb on - strand, within MPMX26_01064at 1130.308 kb on - strand, within MPMX26_01064at 1130.325 kb on - strand, within MPMX26_01064at 1130.334 kb on - strand, within MPMX26_01064at 1130.346 kb on - strand, within MPMX26_01064at 1130.455 kb on - strand, within MPMX26_01064at 1130.461 kb on - strand, within MPMX26_01064at 1130.476 kb on - strand, within MPMX26_01064at 1130.491 kb on - strand, within MPMX26_01064at 1130.499 kb on - strand, within MPMX26_01064at 1130.506 kb on - strand, within MPMX26_01064at 1130.506 kb on - strand, within MPMX26_01064at 1130.515 kb on - strand, within MPMX26_01064at 1130.533 kb on - strand, within MPMX26_01064at 1130.537 kb on - strand, within MPMX26_01064at 1130.538 kb on - strand, within MPMX26_01064at 1130.538 kb on - strand, within MPMX26_01064at 1130.548 kb on - strand, within MPMX26_01064at 1130.669 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.671 kb on - strand, within MPMX26_01064at 1130.679 kb on - strand, within MPMX26_01064at 1130.749 kb on - strandat 1130.784 kb on - strandat 1130.784 kb on - strandat 1130.798 kb on - strandat 1130.921 kb on - strandat 1130.921 kb on - strandat 1130.970 kb on - strandat 1130.985 kb on - strandat 1131.048 kb on - strandat 1131.135 kb on - strand, within MPMX26_01065at 1131.179 kb on - strand, within MPMX26_01065at 1131.311 kb on - strand, within MPMX26_01065at 1131.335 kb on - strand, within MPMX26_01065at 1131.342 kb on - strand, within MPMX26_01065at 1131.342 kb on - strand, within MPMX26_01065at 1131.342 kb on - strand, within MPMX26_01065at 1131.383 kb on - strand, within MPMX26_01065at 1131.437 kb on - strand, within MPMX26_01065at 1131.480 kb on - strand, within MPMX26_01065at 1131.480 kb on - strand, within MPMX26_01065at 1131.480 kb on - strand, within MPMX26_01065at 1131.498 kb on - strand, within MPMX26_01065at 1131.588 kb on - strand, within MPMX26_01065at 1131.605 kb on - strand, within MPMX26_01065at 1131.785 kb on - strand, within MPMX26_01065

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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1,127,912 + MPMX26_01062 0.61 -0.9
1,127,982 + MPMX26_01062 0.68 +0.7
1,128,026 + MPMX26_01062 0.72 +2.5
1,128,077 + MPMX26_01062 0.77 +0.5
1,128,077 + MPMX26_01062 0.77 +0.2
1,128,077 + MPMX26_01062 0.77 -0.3
1,128,077 + MPMX26_01062 0.77 +0.4
1,128,082 + MPMX26_01062 0.78 +0.8
1,128,082 + MPMX26_01062 0.78 +0.3
1,128,092 + MPMX26_01062 0.79 -0.4
1,128,092 + MPMX26_01062 0.79 -1.3
1,128,140 + MPMX26_01062 0.84 -1.8
1,128,140 + MPMX26_01062 0.84 +0.6
1,128,140 + MPMX26_01062 0.84 +0.9
1,128,181 + MPMX26_01062 0.88 +0.2
1,128,260 + +0.9
1,128,260 + +0.2
1,128,260 + +0.7
1,128,260 + -0.2
1,128,260 + -0.7
1,128,263 - +0.5
1,128,277 + +2.3
1,128,277 + +0.2
1,128,587 + MPMX26_01063 0.35 -1.6
1,128,661 + MPMX26_01063 0.68 -0.1
1,128,712 + +0.7
1,128,722 + -0.6
1,128,810 - +0.4
1,128,975 - +0.6
1,129,032 - MPMX26_01064 0.11 +0.9
1,129,032 - MPMX26_01064 0.11 +0.5
1,129,090 - MPMX26_01064 0.14 +0.1
1,129,107 - MPMX26_01064 0.15 +0.3
1,129,189 - MPMX26_01064 0.19 +0.9
1,129,244 - MPMX26_01064 0.21 -1.1
1,129,294 - MPMX26_01064 0.24 +1.2
1,129,302 - MPMX26_01064 0.24 +0.8
1,129,438 - MPMX26_01064 0.30 +1.0
1,129,683 - MPMX26_01064 0.42 +0.4
1,129,683 - MPMX26_01064 0.42 +0.9
1,129,780 - MPMX26_01064 0.47 +1.0
1,129,785 - MPMX26_01064 0.47 +1.1
1,129,815 - MPMX26_01064 0.48 +0.5
1,129,815 - MPMX26_01064 0.48 +0.5
1,129,827 - MPMX26_01064 0.49 +0.5
1,129,849 - MPMX26_01064 0.50 +0.4
1,129,849 - MPMX26_01064 0.50 +0.7
1,129,849 - MPMX26_01064 0.50 -0.6
1,129,849 - MPMX26_01064 0.50 +0.9
1,129,849 - MPMX26_01064 0.50 +0.9
1,129,849 - MPMX26_01064 0.50 -0.3
1,129,864 - MPMX26_01064 0.50 +1.1
1,129,866 - MPMX26_01064 0.51 +0.4
1,129,912 - MPMX26_01064 0.53 -1.9
1,129,912 - MPMX26_01064 0.53 +0.5
1,129,951 - MPMX26_01064 0.55 +0.5
1,130,044 - MPMX26_01064 0.59 -0.4
1,130,062 - MPMX26_01064 0.60 +0.3
1,130,063 - MPMX26_01064 0.60 +0.8
1,130,091 - MPMX26_01064 0.61 +0.4
1,130,091 - MPMX26_01064 0.61 +0.3
1,130,091 - MPMX26_01064 0.61 +0.4
1,130,105 - MPMX26_01064 0.62 +0.8
1,130,154 - MPMX26_01064 0.64 +1.5
1,130,166 - MPMX26_01064 0.65 +0.7
1,130,260 - MPMX26_01064 0.69 +0.4
1,130,260 - MPMX26_01064 0.69 +0.4
1,130,308 - MPMX26_01064 0.71 +1.9
1,130,325 - MPMX26_01064 0.72 +0.6
1,130,334 - MPMX26_01064 0.73 +0.7
1,130,346 - MPMX26_01064 0.73 +0.9
1,130,455 - MPMX26_01064 0.78 +0.8
1,130,461 - MPMX26_01064 0.79 +1.3
1,130,476 - MPMX26_01064 0.79 +0.4
1,130,491 - MPMX26_01064 0.80 +1.0
1,130,499 - MPMX26_01064 0.80 +0.4
1,130,506 - MPMX26_01064 0.81 -0.1
1,130,506 - MPMX26_01064 0.81 +0.4
1,130,515 - MPMX26_01064 0.81 -0.2
1,130,533 - MPMX26_01064 0.82 +0.3
1,130,537 - MPMX26_01064 0.82 +1.2
1,130,538 - MPMX26_01064 0.82 +0.8
1,130,538 - MPMX26_01064 0.82 +1.0
1,130,548 - MPMX26_01064 0.83 +0.1
1,130,669 - MPMX26_01064 0.88 +1.2
1,130,671 - MPMX26_01064 0.89 +0.8
1,130,671 - MPMX26_01064 0.89 -0.1
1,130,671 - MPMX26_01064 0.89 +1.1
1,130,671 - MPMX26_01064 0.89 +0.4
1,130,671 - MPMX26_01064 0.89 +0.5
1,130,671 - MPMX26_01064 0.89 +0.8
1,130,671 - MPMX26_01064 0.89 +1.1
1,130,671 - MPMX26_01064 0.89 +0.5
1,130,679 - MPMX26_01064 0.89 +0.1
1,130,749 - +0.3
1,130,784 - +0.8
1,130,784 - -0.5
1,130,798 - +0.7
1,130,921 - +1.0
1,130,921 - +0.6
1,130,970 - +0.3
1,130,985 - -0.1
1,131,048 - +1.5
1,131,135 - MPMX26_01065 0.13 +0.3
1,131,179 - MPMX26_01065 0.15 +0.0
1,131,311 - MPMX26_01065 0.23 +0.1
1,131,335 - MPMX26_01065 0.24 +0.3
1,131,342 - MPMX26_01065 0.25 +1.9
1,131,342 - MPMX26_01065 0.25 -1.9
1,131,342 - MPMX26_01065 0.25 +0.9
1,131,383 - MPMX26_01065 0.27 +0.7
1,131,437 - MPMX26_01065 0.30 -0.4
1,131,480 - MPMX26_01065 0.32 +1.5
1,131,480 - MPMX26_01065 0.32 +1.1
1,131,480 - MPMX26_01065 0.32 +1.1
1,131,498 - MPMX26_01065 0.34 +0.4
1,131,588 - MPMX26_01065 0.39 +0.5
1,131,605 - MPMX26_01065 0.40 +0.1
1,131,785 - MPMX26_01065 0.50 +0.5

Or see this region's nucleotide sequence