Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01009

Experiment: UV exposure at 150J/m2 for 10 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01008 and MPMX26_01009 are separated by 516 nucleotidesMPMX26_01009 and MPMX26_01010 are separated by 225 nucleotides MPMX26_01008: MPMX26_01008 - hypothetical protein, at 1,061,132 to 1,062,835 _01008 MPMX26_01009: MPMX26_01009 - Isocitrate dehydrogenase [NADP], at 1,063,352 to 1,065,589 _01009 MPMX26_01010: MPMX26_01010 - hypothetical protein, at 1,065,815 to 1,066,831 _01010 Position (kb) 1063 1064 1065 1066Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1062.412 kb on + strand, within MPMX26_01008at 1062.419 kb on + strand, within MPMX26_01008at 1062.429 kb on + strand, within MPMX26_01008at 1062.429 kb on + strand, within MPMX26_01008at 1062.429 kb on + strand, within MPMX26_01008at 1062.451 kb on + strand, within MPMX26_01008at 1062.484 kb on + strand, within MPMX26_01008at 1062.505 kb on + strand, within MPMX26_01008at 1062.570 kb on + strand, within MPMX26_01008at 1062.585 kb on + strand, within MPMX26_01008at 1062.596 kb on + strand, within MPMX26_01008at 1062.654 kb on + strand, within MPMX26_01008at 1062.666 kb on + strandat 1062.666 kb on + strandat 1062.666 kb on + strandat 1062.666 kb on + strandat 1062.726 kb on + strandat 1062.729 kb on + strandat 1062.752 kb on + strandat 1062.752 kb on + strandat 1062.752 kb on + strandat 1062.752 kb on + strandat 1062.762 kb on + strandat 1062.770 kb on + strandat 1062.770 kb on + strandat 1062.770 kb on + strandat 1062.770 kb on + strandat 1062.770 kb on + strandat 1062.839 kb on + strandat 1062.844 kb on + strandat 1063.254 kb on + strandat 1063.255 kb on + strandat 1063.297 kb on + strandat 1063.311 kb on + strandat 1063.343 kb on + strandat 1063.348 kb on + strandat 1063.458 kb on + strandat 1063.551 kb on + strandat 1063.623 kb on + strand, within MPMX26_01009at 1063.644 kb on + strand, within MPMX26_01009at 1063.761 kb on + strand, within MPMX26_01009at 1063.761 kb on + strand, within MPMX26_01009at 1063.766 kb on + strand, within MPMX26_01009at 1063.837 kb on + strand, within MPMX26_01009at 1063.837 kb on + strand, within MPMX26_01009at 1064.226 kb on + strand, within MPMX26_01009at 1064.242 kb on + strand, within MPMX26_01009at 1064.242 kb on + strand, within MPMX26_01009at 1064.311 kb on + strand, within MPMX26_01009at 1064.311 kb on + strand, within MPMX26_01009at 1064.319 kb on + strand, within MPMX26_01009at 1064.324 kb on + strand, within MPMX26_01009at 1064.350 kb on + strand, within MPMX26_01009at 1064.350 kb on + strand, within MPMX26_01009at 1064.465 kb on + strand, within MPMX26_01009at 1064.465 kb on + strand, within MPMX26_01009at 1064.465 kb on + strand, within MPMX26_01009at 1064.473 kb on + strand, within MPMX26_01009at 1064.576 kb on + strand, within MPMX26_01009at 1064.578 kb on + strand, within MPMX26_01009at 1064.578 kb on + strand, within MPMX26_01009at 1064.578 kb on + strand, within MPMX26_01009at 1064.626 kb on + strand, within MPMX26_01009at 1064.634 kb on + strand, within MPMX26_01009at 1064.731 kb on + strand, within MPMX26_01009at 1064.766 kb on + strand, within MPMX26_01009at 1064.815 kb on + strand, within MPMX26_01009at 1064.825 kb on + strand, within MPMX26_01009at 1064.897 kb on + strand, within MPMX26_01009at 1065.004 kb on + strand, within MPMX26_01009at 1065.037 kb on + strand, within MPMX26_01009at 1065.037 kb on + strand, within MPMX26_01009at 1065.037 kb on + strand, within MPMX26_01009at 1065.037 kb on + strand, within MPMX26_01009at 1065.224 kb on + strand, within MPMX26_01009at 1065.328 kb on + strand, within MPMX26_01009at 1065.422 kb on + strandat 1065.422 kb on + strandat 1065.502 kb on + strandat 1065.502 kb on + strandat 1065.584 kb on + strandat 1065.584 kb on + strandat 1065.584 kb on + strandat 1065.584 kb on + strandat 1065.594 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
remove
1,062,412 + MPMX26_01008 0.75 -0.3
1,062,419 + MPMX26_01008 0.76 +0.0
1,062,429 + MPMX26_01008 0.76 +0.5
1,062,429 + MPMX26_01008 0.76 -0.2
1,062,429 + MPMX26_01008 0.76 +0.0
1,062,451 + MPMX26_01008 0.77 -0.1
1,062,484 + MPMX26_01008 0.79 +0.2
1,062,505 + MPMX26_01008 0.81 -0.2
1,062,570 + MPMX26_01008 0.84 +0.4
1,062,585 + MPMX26_01008 0.85 +0.1
1,062,596 + MPMX26_01008 0.86 +0.0
1,062,654 + MPMX26_01008 0.89 +0.2
1,062,666 + -0.1
1,062,666 + +0.3
1,062,666 + -0.4
1,062,666 + +0.0
1,062,726 + -0.2
1,062,729 + -0.1
1,062,752 + +1.3
1,062,752 + +0.6
1,062,752 + +0.5
1,062,752 + +0.7
1,062,762 + -0.7
1,062,770 + -0.1
1,062,770 + -0.5
1,062,770 + +0.2
1,062,770 + -0.4
1,062,770 + -0.4
1,062,839 + -1.1
1,062,844 + -0.8
1,063,254 + -2.0
1,063,255 + -0.4
1,063,297 + -0.9
1,063,311 + -0.8
1,063,343 + +0.3
1,063,348 + +0.9
1,063,458 + -0.9
1,063,551 + +0.3
1,063,623 + MPMX26_01009 0.12 +2.9
1,063,644 + MPMX26_01009 0.13 -0.7
1,063,761 + MPMX26_01009 0.18 -1.1
1,063,761 + MPMX26_01009 0.18 -0.6
1,063,766 + MPMX26_01009 0.18 -1.1
1,063,837 + MPMX26_01009 0.22 +0.9
1,063,837 + MPMX26_01009 0.22 +0.3
1,064,226 + MPMX26_01009 0.39 -0.3
1,064,242 + MPMX26_01009 0.40 +1.9
1,064,242 + MPMX26_01009 0.40 +0.9
1,064,311 + MPMX26_01009 0.43 -1.3
1,064,311 + MPMX26_01009 0.43 -1.4
1,064,319 + MPMX26_01009 0.43 -0.1
1,064,324 + MPMX26_01009 0.43 -0.4
1,064,350 + MPMX26_01009 0.45 +0.9
1,064,350 + MPMX26_01009 0.45 +0.9
1,064,465 + MPMX26_01009 0.50 +0.9
1,064,465 + MPMX26_01009 0.50 -0.7
1,064,465 + MPMX26_01009 0.50 -4.2
1,064,473 + MPMX26_01009 0.50 -0.1
1,064,576 + MPMX26_01009 0.55 -0.9
1,064,578 + MPMX26_01009 0.55 -1.7
1,064,578 + MPMX26_01009 0.55 -0.4
1,064,578 + MPMX26_01009 0.55 -0.9
1,064,626 + MPMX26_01009 0.57 -0.9
1,064,634 + MPMX26_01009 0.57 -1.3
1,064,731 + MPMX26_01009 0.62 -0.7
1,064,766 + MPMX26_01009 0.63 +0.3
1,064,815 + MPMX26_01009 0.65 -0.4
1,064,825 + MPMX26_01009 0.66 -2.1
1,064,897 + MPMX26_01009 0.69 -0.4
1,065,004 + MPMX26_01009 0.74 -0.7
1,065,037 + MPMX26_01009 0.75 -0.9
1,065,037 + MPMX26_01009 0.75 +0.9
1,065,037 + MPMX26_01009 0.75 -0.4
1,065,037 + MPMX26_01009 0.75 -1.3
1,065,224 + MPMX26_01009 0.84 -1.4
1,065,328 + MPMX26_01009 0.88 -0.4
1,065,422 + -0.1
1,065,422 + +0.1
1,065,502 + +0.3
1,065,502 + -0.7
1,065,584 + +0.3
1,065,584 + -0.0
1,065,584 + +0.4
1,065,584 + +0.6
1,065,594 + +0.1

Or see this region's nucleotide sequence