Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21275 and ABZR88_RS21280 are separated by 139 nucleotides ABZR88_RS21280 and ABZR88_RS21285 are separated by 12 nucleotides ABZR88_RS21285 and ABZR88_RS21290 are separated by 166 nucleotides ABZR88_RS21290 and ABZR88_RS21295 are separated by 257 nucleotides ABZR88_RS21295 and ABZR88_RS21300 are separated by 528 nucleotides
ABZR88_RS21275: ABZR88_RS21275 - hypothetical protein, at 5,130,796 to 5,131,185
_RS21275
ABZR88_RS21280: ABZR88_RS21280 - hypothetical protein, at 5,131,325 to 5,131,546
_RS21280
ABZR88_RS21285: ABZR88_RS21285 - hypothetical protein, at 5,131,559 to 5,131,885
_RS21285
ABZR88_RS21290: ABZR88_RS21290 - cupin domain-containing protein, at 5,132,052 to 5,132,453
_RS21290
ABZR88_RS21295: ABZR88_RS21295 - hypothetical protein, at 5,132,711 to 5,132,911
_RS21295
ABZR88_RS21300: ABZR88_RS21300 - hypothetical protein, at 5,133,440 to 5,134,081
_RS21300
Position (kb) 5132
5133 Strain fitness (log2 ratio) -1
0
1
2 at 5131.240 kb on + strand at 5131.241 kb on - strand at 5131.362 kb on - strand, within ABZR88_RS21280 at 5131.463 kb on - strand, within ABZR88_RS21280 at 5131.582 kb on + strand at 5131.653 kb on - strand, within ABZR88_RS21285 at 5131.653 kb on - strand, within ABZR88_RS21285 at 5131.970 kb on + strand at 5132.011 kb on + strand at 5132.098 kb on + strand, within ABZR88_RS21290 at 5132.384 kb on + strand, within ABZR88_RS21290 at 5132.404 kb on + strand, within ABZR88_RS21290 at 5132.574 kb on + strand at 5132.574 kb on + strand at 5132.656 kb on + strand at 5132.661 kb on - strand at 5132.697 kb on - strand at 5132.842 kb on - strand, within ABZR88_RS21295 at 5132.877 kb on - strand, within ABZR88_RS21295 at 5133.023 kb on - strand at 5133.043 kb on - strand at 5133.171 kb on + strand at 5133.271 kb on + strand at 5133.350 kb on - strand at 5133.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM remove 5,131,240 + -0.2 5,131,241 - +0.1 5,131,362 - ABZR88_RS21280 0.17 -0.3 5,131,463 - ABZR88_RS21280 0.62 -0.4 5,131,582 + +0.1 5,131,653 - ABZR88_RS21285 0.29 +2.1 5,131,653 - ABZR88_RS21285 0.29 -0.2 5,131,970 + +0.3 5,132,011 + -0.2 5,132,098 + ABZR88_RS21290 0.11 -0.5 5,132,384 + ABZR88_RS21290 0.83 -0.1 5,132,404 + ABZR88_RS21290 0.88 +0.2 5,132,574 + +0.0 5,132,574 + +0.4 5,132,656 + +0.3 5,132,661 - +1.1 5,132,697 - -0.5 5,132,842 - ABZR88_RS21295 0.65 +0.8 5,132,877 - ABZR88_RS21295 0.83 -0.6 5,133,023 - +1.4 5,133,043 - +1.3 5,133,171 + -0.6 5,133,271 + +0.3 5,133,350 - +1.2 5,133,382 - +0.1
Or see this region's nucleotide sequence