Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11375 and ABZR88_RS11380 are separated by 12 nucleotides ABZR88_RS11380 and ABZR88_RS11385 are separated by 126 nucleotides ABZR88_RS11385 and ABZR88_RS11390 overlap by 8 nucleotides
ABZR88_RS11375: ABZR88_RS11375 - TonB-dependent receptor, at 2,802,784 to 2,805,795
_RS11375
ABZR88_RS11380: ABZR88_RS11380 - RagB/SusD family nutrient uptake outer membrane protein, at 2,805,808 to 2,807,622
_RS11380
ABZR88_RS11385: ABZR88_RS11385 - nuclear transport factor 2 family protein, at 2,807,749 to 2,808,105
_RS11385
ABZR88_RS11390: ABZR88_RS11390 - GNAT family N-acetyltransferase, at 2,808,098 to 2,808,706
_RS11390
Position (kb)
2805
2806
2807
2808 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2804.826 kb on - strand, within ABZR88_RS11375 at 2804.919 kb on + strand, within ABZR88_RS11375 at 2805.166 kb on + strand, within ABZR88_RS11375 at 2805.363 kb on + strand, within ABZR88_RS11375 at 2805.370 kb on - strand, within ABZR88_RS11375 at 2805.440 kb on + strand, within ABZR88_RS11375 at 2805.689 kb on + strand at 2805.757 kb on + strand at 2805.758 kb on - strand at 2805.871 kb on - strand at 2805.886 kb on - strand at 2805.948 kb on + strand at 2805.949 kb on - strand at 2806.148 kb on + strand, within ABZR88_RS11380 at 2806.148 kb on + strand, within ABZR88_RS11380 at 2806.234 kb on + strand, within ABZR88_RS11380 at 2806.253 kb on - strand, within ABZR88_RS11380 at 2806.321 kb on - strand, within ABZR88_RS11380 at 2806.355 kb on - strand, within ABZR88_RS11380 at 2806.484 kb on - strand, within ABZR88_RS11380 at 2806.492 kb on - strand, within ABZR88_RS11380 at 2806.501 kb on + strand, within ABZR88_RS11380 at 2806.579 kb on - strand, within ABZR88_RS11380 at 2806.941 kb on + strand, within ABZR88_RS11380 at 2806.941 kb on + strand, within ABZR88_RS11380 at 2807.008 kb on - strand, within ABZR88_RS11380 at 2807.197 kb on - strand, within ABZR88_RS11380 at 2807.263 kb on - strand, within ABZR88_RS11380 at 2807.600 kb on - strand at 2807.726 kb on - strand at 2807.837 kb on - strand, within ABZR88_RS11385 at 2807.954 kb on - strand, within ABZR88_RS11385 at 2808.011 kb on + strand, within ABZR88_RS11385 at 2808.016 kb on + strand, within ABZR88_RS11385 at 2808.017 kb on - strand, within ABZR88_RS11385 at 2808.021 kb on - strand, within ABZR88_RS11385 at 2808.143 kb on - strand at 2808.147 kb on + strand at 2808.269 kb on - strand, within ABZR88_RS11390 at 2808.559 kb on + strand, within ABZR88_RS11390
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM remove 2,804,826 - ABZR88_RS11375 0.68 -0.6 2,804,919 + ABZR88_RS11375 0.71 +0.1 2,805,166 + ABZR88_RS11375 0.79 +0.3 2,805,363 + ABZR88_RS11375 0.86 +0.8 2,805,370 - ABZR88_RS11375 0.86 +1.8 2,805,440 + ABZR88_RS11375 0.88 -1.4 2,805,689 + +0.0 2,805,757 + +0.3 2,805,758 - +0.2 2,805,871 - -0.1 2,805,886 - +0.4 2,805,948 + +0.0 2,805,949 - +0.1 2,806,148 + ABZR88_RS11380 0.19 -0.3 2,806,148 + ABZR88_RS11380 0.19 +0.1 2,806,234 + ABZR88_RS11380 0.23 -0.2 2,806,253 - ABZR88_RS11380 0.25 -0.5 2,806,321 - ABZR88_RS11380 0.28 -0.2 2,806,355 - ABZR88_RS11380 0.30 +0.4 2,806,484 - ABZR88_RS11380 0.37 +1.4 2,806,492 - ABZR88_RS11380 0.38 +0.3 2,806,501 + ABZR88_RS11380 0.38 -0.3 2,806,579 - ABZR88_RS11380 0.42 -0.4 2,806,941 + ABZR88_RS11380 0.62 -0.8 2,806,941 + ABZR88_RS11380 0.62 +0.0 2,807,008 - ABZR88_RS11380 0.66 +0.2 2,807,197 - ABZR88_RS11380 0.77 +0.3 2,807,263 - ABZR88_RS11380 0.80 +1.0 2,807,600 - +0.2 2,807,726 - +0.2 2,807,837 - ABZR88_RS11385 0.25 -0.0 2,807,954 - ABZR88_RS11385 0.57 -0.1 2,808,011 + ABZR88_RS11385 0.73 -0.8 2,808,016 + ABZR88_RS11385 0.75 -0.3 2,808,017 - ABZR88_RS11385 0.75 +0.1 2,808,021 - ABZR88_RS11385 0.76 -0.7 2,808,143 - +0.5 2,808,147 + -2.1 2,808,269 - ABZR88_RS11390 0.28 -0.5 2,808,559 + ABZR88_RS11390 0.76 -0.4
Or see this region's nucleotide sequence