Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS11380

Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS11375 and ABZR88_RS11380 are separated by 12 nucleotidesABZR88_RS11380 and ABZR88_RS11385 are separated by 126 nucleotidesABZR88_RS11385 and ABZR88_RS11390 overlap by 8 nucleotides ABZR88_RS11375: ABZR88_RS11375 - TonB-dependent receptor, at 2,802,784 to 2,805,795 _RS11375 ABZR88_RS11380: ABZR88_RS11380 - RagB/SusD family nutrient uptake outer membrane protein, at 2,805,808 to 2,807,622 _RS11380 ABZR88_RS11385: ABZR88_RS11385 - nuclear transport factor 2 family protein, at 2,807,749 to 2,808,105 _RS11385 ABZR88_RS11390: ABZR88_RS11390 - GNAT family N-acetyltransferase, at 2,808,098 to 2,808,706 _RS11390 Position (kb) 2805 2806 2807 2808Strain fitness (log2 ratio) -2 -1 0 1 2at 2804.826 kb on - strand, within ABZR88_RS11375at 2804.919 kb on + strand, within ABZR88_RS11375at 2805.166 kb on + strand, within ABZR88_RS11375at 2805.363 kb on + strand, within ABZR88_RS11375at 2805.370 kb on - strand, within ABZR88_RS11375at 2805.440 kb on + strand, within ABZR88_RS11375at 2805.689 kb on + strandat 2805.757 kb on + strandat 2805.758 kb on - strandat 2805.871 kb on - strandat 2805.886 kb on - strandat 2805.948 kb on + strandat 2805.949 kb on - strandat 2806.148 kb on + strand, within ABZR88_RS11380at 2806.148 kb on + strand, within ABZR88_RS11380at 2806.234 kb on + strand, within ABZR88_RS11380at 2806.253 kb on - strand, within ABZR88_RS11380at 2806.321 kb on - strand, within ABZR88_RS11380at 2806.355 kb on - strand, within ABZR88_RS11380at 2806.484 kb on - strand, within ABZR88_RS11380at 2806.492 kb on - strand, within ABZR88_RS11380at 2806.501 kb on + strand, within ABZR88_RS11380at 2806.579 kb on - strand, within ABZR88_RS11380at 2806.941 kb on + strand, within ABZR88_RS11380at 2806.941 kb on + strand, within ABZR88_RS11380at 2807.008 kb on - strand, within ABZR88_RS11380at 2807.197 kb on - strand, within ABZR88_RS11380at 2807.263 kb on - strand, within ABZR88_RS11380at 2807.600 kb on - strandat 2807.726 kb on - strandat 2807.837 kb on - strand, within ABZR88_RS11385at 2807.954 kb on - strand, within ABZR88_RS11385at 2808.011 kb on + strand, within ABZR88_RS11385at 2808.016 kb on + strand, within ABZR88_RS11385at 2808.017 kb on - strand, within ABZR88_RS11385at 2808.021 kb on - strand, within ABZR88_RS11385at 2808.143 kb on - strandat 2808.147 kb on + strandat 2808.269 kb on - strand, within ABZR88_RS11390at 2808.559 kb on + strand, within ABZR88_RS11390

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
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2,804,826 - ABZR88_RS11375 0.68 -0.6
2,804,919 + ABZR88_RS11375 0.71 +0.1
2,805,166 + ABZR88_RS11375 0.79 +0.3
2,805,363 + ABZR88_RS11375 0.86 +0.8
2,805,370 - ABZR88_RS11375 0.86 +1.8
2,805,440 + ABZR88_RS11375 0.88 -1.4
2,805,689 + +0.0
2,805,757 + +0.3
2,805,758 - +0.2
2,805,871 - -0.1
2,805,886 - +0.4
2,805,948 + +0.0
2,805,949 - +0.1
2,806,148 + ABZR88_RS11380 0.19 -0.3
2,806,148 + ABZR88_RS11380 0.19 +0.1
2,806,234 + ABZR88_RS11380 0.23 -0.2
2,806,253 - ABZR88_RS11380 0.25 -0.5
2,806,321 - ABZR88_RS11380 0.28 -0.2
2,806,355 - ABZR88_RS11380 0.30 +0.4
2,806,484 - ABZR88_RS11380 0.37 +1.4
2,806,492 - ABZR88_RS11380 0.38 +0.3
2,806,501 + ABZR88_RS11380 0.38 -0.3
2,806,579 - ABZR88_RS11380 0.42 -0.4
2,806,941 + ABZR88_RS11380 0.62 -0.8
2,806,941 + ABZR88_RS11380 0.62 +0.0
2,807,008 - ABZR88_RS11380 0.66 +0.2
2,807,197 - ABZR88_RS11380 0.77 +0.3
2,807,263 - ABZR88_RS11380 0.80 +1.0
2,807,600 - +0.2
2,807,726 - +0.2
2,807,837 - ABZR88_RS11385 0.25 -0.0
2,807,954 - ABZR88_RS11385 0.57 -0.1
2,808,011 + ABZR88_RS11385 0.73 -0.8
2,808,016 + ABZR88_RS11385 0.75 -0.3
2,808,017 - ABZR88_RS11385 0.75 +0.1
2,808,021 - ABZR88_RS11385 0.76 -0.7
2,808,143 - +0.5
2,808,147 + -2.1
2,808,269 - ABZR88_RS11390 0.28 -0.5
2,808,559 + ABZR88_RS11390 0.76 -0.4

Or see this region's nucleotide sequence