Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02482

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02481 and MPMX26_02482 are separated by 260 nucleotidesMPMX26_02482 and MPMX26_02483 are separated by 428 nucleotides MPMX26_02481: MPMX26_02481 - 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming), at 2,565,667 to 2,568,273 _02481 MPMX26_02482: MPMX26_02482 - tRNA-modifying protein YgfZ, at 2,568,534 to 2,569,253 _02482 MPMX26_02483: MPMX26_02483 - hypothetical protein, at 2,569,682 to 2,570,470 _02483 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1at 2567.665 kb on - strand, within MPMX26_02481at 2567.719 kb on - strand, within MPMX26_02481at 2567.724 kb on - strand, within MPMX26_02481at 2567.752 kb on - strand, within MPMX26_02481at 2567.752 kb on - strand, within MPMX26_02481at 2567.856 kb on - strand, within MPMX26_02481at 2567.856 kb on - strand, within MPMX26_02481at 2567.856 kb on - strand, within MPMX26_02481at 2567.971 kb on - strand, within MPMX26_02481at 2567.971 kb on - strand, within MPMX26_02481at 2568.015 kb on - strandat 2568.015 kb on - strandat 2568.015 kb on - strandat 2568.082 kb on - strandat 2568.082 kb on - strandat 2568.082 kb on - strandat 2568.172 kb on - strandat 2568.217 kb on - strandat 2568.217 kb on - strandat 2568.227 kb on - strandat 2568.350 kb on - strandat 2568.518 kb on + strandat 2569.223 kb on + strandat 2569.248 kb on + strandat 2569.717 kb on + strandat 2569.814 kb on + strand, within MPMX26_02483at 2569.814 kb on + strand, within MPMX26_02483at 2569.861 kb on + strand, within MPMX26_02483at 2569.861 kb on + strand, within MPMX26_02483at 2569.861 kb on + strand, within MPMX26_02483at 2569.861 kb on + strand, within MPMX26_02483at 2569.920 kb on + strand, within MPMX26_02483at 2569.946 kb on + strand, within MPMX26_02483at 2569.951 kb on + strand, within MPMX26_02483at 2569.953 kb on + strand, within MPMX26_02483at 2569.968 kb on + strand, within MPMX26_02483at 2569.979 kb on + strand, within MPMX26_02483at 2569.995 kb on + strand, within MPMX26_02483at 2570.000 kb on + strand, within MPMX26_02483at 2570.000 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.011 kb on + strand, within MPMX26_02483at 2570.018 kb on + strand, within MPMX26_02483at 2570.030 kb on + strand, within MPMX26_02483at 2570.076 kb on + strand, within MPMX26_02483at 2570.086 kb on + strand, within MPMX26_02483at 2570.120 kb on + strand, within MPMX26_02483at 2570.190 kb on + strand, within MPMX26_02483at 2570.198 kb on + strand, within MPMX26_02483at 2570.198 kb on + strand, within MPMX26_02483

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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2,567,665 - MPMX26_02481 0.77 +0.6
2,567,719 - MPMX26_02481 0.79 +1.5
2,567,724 - MPMX26_02481 0.79 -0.6
2,567,752 - MPMX26_02481 0.80 -1.3
2,567,752 - MPMX26_02481 0.80 -0.3
2,567,856 - MPMX26_02481 0.84 -0.3
2,567,856 - MPMX26_02481 0.84 -1.0
2,567,856 - MPMX26_02481 0.84 +0.5
2,567,971 - MPMX26_02481 0.88 -1.4
2,567,971 - MPMX26_02481 0.88 -0.1
2,568,015 - -1.3
2,568,015 - -1.2
2,568,015 - -0.1
2,568,082 - -0.3
2,568,082 - -0.7
2,568,082 - -0.3
2,568,172 - -1.0
2,568,217 - -1.1
2,568,217 - -0.5
2,568,227 - +0.1
2,568,350 - +0.0
2,568,518 + -1.0
2,569,223 + -0.3
2,569,248 + -2.1
2,569,717 + +0.0
2,569,814 + MPMX26_02483 0.17 +0.1
2,569,814 + MPMX26_02483 0.17 +0.9
2,569,861 + MPMX26_02483 0.23 -0.1
2,569,861 + MPMX26_02483 0.23 -0.3
2,569,861 + MPMX26_02483 0.23 +0.1
2,569,861 + MPMX26_02483 0.23 -0.1
2,569,920 + MPMX26_02483 0.30 +1.0
2,569,946 + MPMX26_02483 0.33 +0.3
2,569,951 + MPMX26_02483 0.34 -0.6
2,569,953 + MPMX26_02483 0.34 -1.0
2,569,968 + MPMX26_02483 0.36 -0.5
2,569,979 + MPMX26_02483 0.38 +0.4
2,569,995 + MPMX26_02483 0.40 +0.0
2,570,000 + MPMX26_02483 0.40 +0.1
2,570,000 + MPMX26_02483 0.40 +0.0
2,570,011 + MPMX26_02483 0.42 +0.3
2,570,011 + MPMX26_02483 0.42 -0.2
2,570,011 + MPMX26_02483 0.42 +0.2
2,570,011 + MPMX26_02483 0.42 -0.0
2,570,011 + MPMX26_02483 0.42 -0.2
2,570,011 + MPMX26_02483 0.42 -0.3
2,570,018 + MPMX26_02483 0.43 +0.6
2,570,030 + MPMX26_02483 0.44 -0.6
2,570,076 + MPMX26_02483 0.50 +1.0
2,570,086 + MPMX26_02483 0.51 +0.4
2,570,120 + MPMX26_02483 0.56 +0.3
2,570,190 + MPMX26_02483 0.64 -1.0
2,570,198 + MPMX26_02483 0.65 +0.3
2,570,198 + MPMX26_02483 0.65 +0.1

Or see this region's nucleotide sequence