Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02409

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02407 and MPMX26_02408 are separated by 111 nucleotidesMPMX26_02408 and MPMX26_02409 are separated by 45 nucleotidesMPMX26_02409 and MPMX26_02410 overlap by 1 nucleotides MPMX26_02407: MPMX26_02407 - Ferric uptake regulation protein, at 2,493,031 to 2,493,468 _02407 MPMX26_02408: MPMX26_02408 - Outer membrane protein assembly factor BamE, at 2,493,580 to 2,493,978 _02408 MPMX26_02409: MPMX26_02409 - hypothetical protein, at 2,494,024 to 2,494,347 _02409 MPMX26_02410: MPMX26_02410 - hypothetical protein, at 2,494,347 to 2,495,429 _02410 Position (kb) 2494 2495Strain fitness (log2 ratio) -2 -1 0 1 2at 2493.434 kb on - strandat 2493.616 kb on - strandat 2493.616 kb on - strandat 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.629 kb on + strand, within MPMX26_02408at 2493.637 kb on - strand, within MPMX26_02408at 2493.660 kb on + strand, within MPMX26_02408at 2493.660 kb on + strand, within MPMX26_02408at 2493.708 kb on + strand, within MPMX26_02408at 2493.713 kb on + strand, within MPMX26_02408at 2493.772 kb on + strand, within MPMX26_02408at 2493.789 kb on + strand, within MPMX26_02408at 2493.831 kb on + strand, within MPMX26_02408at 2493.831 kb on + strand, within MPMX26_02408at 2493.903 kb on + strand, within MPMX26_02408at 2493.903 kb on + strand, within MPMX26_02408at 2493.903 kb on + strand, within MPMX26_02408at 2493.921 kb on + strand, within MPMX26_02408at 2493.940 kb on + strandat 2493.968 kb on + strandat 2494.068 kb on - strand, within MPMX26_02409at 2494.123 kb on - strand, within MPMX26_02409at 2494.165 kb on - strand, within MPMX26_02409at 2494.165 kb on - strand, within MPMX26_02409at 2494.170 kb on - strand, within MPMX26_02409at 2494.206 kb on - strand, within MPMX26_02409at 2494.206 kb on - strand, within MPMX26_02409at 2494.206 kb on - strand, within MPMX26_02409at 2494.206 kb on - strand, within MPMX26_02409at 2494.270 kb on - strand, within MPMX26_02409at 2494.309 kb on - strand, within MPMX26_02409at 2494.315 kb on - strandat 2494.335 kb on - strandat 2494.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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2,493,434 - +2.1
2,493,616 - -0.4
2,493,616 - +1.3
2,493,629 + MPMX26_02408 0.12 +0.4
2,493,629 + MPMX26_02408 0.12 +0.8
2,493,629 + MPMX26_02408 0.12 +0.1
2,493,629 + MPMX26_02408 0.12 -0.5
2,493,629 + MPMX26_02408 0.12 -1.7
2,493,629 + MPMX26_02408 0.12 -0.7
2,493,629 + MPMX26_02408 0.12 -0.3
2,493,637 - MPMX26_02408 0.14 +0.5
2,493,660 + MPMX26_02408 0.20 -0.2
2,493,660 + MPMX26_02408 0.20 -0.1
2,493,708 + MPMX26_02408 0.32 +0.2
2,493,713 + MPMX26_02408 0.33 -0.3
2,493,772 + MPMX26_02408 0.48 -0.9
2,493,789 + MPMX26_02408 0.52 -1.4
2,493,831 + MPMX26_02408 0.63 +0.1
2,493,831 + MPMX26_02408 0.63 -0.6
2,493,903 + MPMX26_02408 0.81 -0.2
2,493,903 + MPMX26_02408 0.81 -0.3
2,493,903 + MPMX26_02408 0.81 +0.0
2,493,921 + MPMX26_02408 0.85 -0.1
2,493,940 + +0.1
2,493,968 + -0.4
2,494,068 - MPMX26_02409 0.14 +0.3
2,494,123 - MPMX26_02409 0.31 +0.6
2,494,165 - MPMX26_02409 0.44 -0.7
2,494,165 - MPMX26_02409 0.44 +0.5
2,494,170 - MPMX26_02409 0.45 -1.7
2,494,206 - MPMX26_02409 0.56 -0.0
2,494,206 - MPMX26_02409 0.56 +1.1
2,494,206 - MPMX26_02409 0.56 +0.5
2,494,206 - MPMX26_02409 0.56 +0.6
2,494,270 - MPMX26_02409 0.76 +1.0
2,494,309 - MPMX26_02409 0.88 +1.5
2,494,315 - -0.5
2,494,335 - +0.1
2,494,364 - -2.0

Or see this region's nucleotide sequence