Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02028

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02025 and MPMX26_02026 are separated by 99 nucleotidesMPMX26_02026 and MPMX26_02027 are separated by 97 nucleotidesMPMX26_02027 and MPMX26_02028 are separated by 2 nucleotidesMPMX26_02028 and MPMX26_02029 are separated by 191 nucleotides MPMX26_02025: MPMX26_02025 - Anthranilate phosphoribosyltransferase, at 2,091,876 to 2,092,877 _02025 MPMX26_02026: MPMX26_02026 - hypothetical protein, at 2,092,977 to 2,093,318 _02026 MPMX26_02027: MPMX26_02027 - hypothetical protein, at 2,093,416 to 2,093,688 _02027 MPMX26_02028: MPMX26_02028 - NAD kinase, at 2,093,691 to 2,094,596 _02028 MPMX26_02029: MPMX26_02029 - Penicillin-binding protein 1B, at 2,094,788 to 2,097,190 _02029 Position (kb) 2093 2094 2095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2092.749 kb on + strand, within MPMX26_02025at 2092.801 kb on + strandat 2092.818 kb on + strandat 2093.019 kb on + strand, within MPMX26_02026at 2093.404 kb on - strandat 2093.459 kb on - strand, within MPMX26_02027at 2093.473 kb on - strand, within MPMX26_02027at 2093.507 kb on - strand, within MPMX26_02027at 2093.513 kb on + strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.541 kb on - strand, within MPMX26_02027at 2093.577 kb on - strand, within MPMX26_02027at 2093.684 kb on - strandat 2094.953 kb on + strandat 2094.983 kb on + strandat 2094.983 kb on + strandat 2094.983 kb on + strandat 2095.066 kb on + strand, within MPMX26_02029at 2095.106 kb on + strand, within MPMX26_02029at 2095.114 kb on + strand, within MPMX26_02029at 2095.196 kb on + strand, within MPMX26_02029at 2095.196 kb on + strand, within MPMX26_02029at 2095.243 kb on + strand, within MPMX26_02029at 2095.243 kb on + strand, within MPMX26_02029at 2095.264 kb on + strand, within MPMX26_02029at 2095.318 kb on + strand, within MPMX26_02029at 2095.319 kb on + strand, within MPMX26_02029at 2095.375 kb on + strand, within MPMX26_02029at 2095.487 kb on + strand, within MPMX26_02029at 2095.544 kb on + strand, within MPMX26_02029

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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2,092,749 + MPMX26_02025 0.87 +0.5
2,092,801 + -0.0
2,092,818 + -0.7
2,093,019 + MPMX26_02026 0.12 +1.3
2,093,404 - +2.1
2,093,459 - MPMX26_02027 0.16 -0.4
2,093,473 - MPMX26_02027 0.21 -1.5
2,093,507 - MPMX26_02027 0.33 -0.6
2,093,513 + MPMX26_02027 0.36 -0.7
2,093,541 - MPMX26_02027 0.46 -0.5
2,093,541 - MPMX26_02027 0.46 -1.4
2,093,541 - MPMX26_02027 0.46 -0.3
2,093,541 - MPMX26_02027 0.46 -0.7
2,093,541 - MPMX26_02027 0.46 -0.5
2,093,541 - MPMX26_02027 0.46 +0.9
2,093,577 - MPMX26_02027 0.59 +0.1
2,093,684 - -0.7
2,094,953 + -1.7
2,094,983 + -1.5
2,094,983 + -2.9
2,094,983 + -0.9
2,095,066 + MPMX26_02029 0.12 -1.9
2,095,106 + MPMX26_02029 0.13 -3.0
2,095,114 + MPMX26_02029 0.14 -0.5
2,095,196 + MPMX26_02029 0.17 +0.5
2,095,196 + MPMX26_02029 0.17 -0.5
2,095,243 + MPMX26_02029 0.19 -2.0
2,095,243 + MPMX26_02029 0.19 -0.8
2,095,264 + MPMX26_02029 0.20 +0.5
2,095,318 + MPMX26_02029 0.22 -0.9
2,095,319 + MPMX26_02029 0.22 -2.3
2,095,375 + MPMX26_02029 0.24 -1.1
2,095,487 + MPMX26_02029 0.29 -2.3
2,095,544 + MPMX26_02029 0.31 -0.2

Or see this region's nucleotide sequence