Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01750

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01749 and MPMX26_01750 are separated by 239 nucleotidesMPMX26_01750 and MPMX26_01751 are separated by 228 nucleotidesMPMX26_01751 and MPMX26_01752 are separated by 87 nucleotides MPMX26_01749: MPMX26_01749 - hypothetical protein, at 1,805,931 to 1,807,322 _01749 MPMX26_01750: MPMX26_01750 - 3-ketoacyl-CoA thiolase FadI, at 1,807,562 to 1,809,052 _01750 MPMX26_01751: MPMX26_01751 - hypothetical protein, at 1,809,281 to 1,809,706 _01751 MPMX26_01752: MPMX26_01752 - hypothetical protein, at 1,809,794 to 1,810,681 _01752 Position (kb) 1807 1808 1809 1810Strain fitness (log2 ratio) -1 0 1 2 3at 1806.594 kb on - strand, within MPMX26_01749at 1806.666 kb on - strand, within MPMX26_01749at 1806.681 kb on - strand, within MPMX26_01749at 1806.696 kb on - strand, within MPMX26_01749at 1806.701 kb on - strand, within MPMX26_01749at 1806.725 kb on - strand, within MPMX26_01749at 1806.741 kb on - strand, within MPMX26_01749at 1806.755 kb on - strand, within MPMX26_01749at 1806.755 kb on - strand, within MPMX26_01749at 1806.813 kb on - strand, within MPMX26_01749at 1806.813 kb on - strand, within MPMX26_01749at 1806.813 kb on - strand, within MPMX26_01749at 1806.813 kb on - strand, within MPMX26_01749at 1806.866 kb on - strand, within MPMX26_01749at 1806.906 kb on - strand, within MPMX26_01749at 1806.914 kb on - strand, within MPMX26_01749at 1806.938 kb on - strand, within MPMX26_01749at 1806.996 kb on - strand, within MPMX26_01749at 1807.029 kb on - strand, within MPMX26_01749at 1807.029 kb on - strand, within MPMX26_01749at 1807.073 kb on - strand, within MPMX26_01749at 1807.073 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.082 kb on - strand, within MPMX26_01749at 1807.095 kb on - strand, within MPMX26_01749at 1807.100 kb on - strand, within MPMX26_01749at 1807.178 kb on - strand, within MPMX26_01749at 1807.194 kb on - strandat 1807.858 kb on + strand, within MPMX26_01750at 1807.858 kb on + strand, within MPMX26_01750at 1807.883 kb on + strand, within MPMX26_01750at 1807.972 kb on + strand, within MPMX26_01750at 1808.044 kb on + strand, within MPMX26_01750at 1808.057 kb on + strand, within MPMX26_01750at 1808.057 kb on + strand, within MPMX26_01750at 1808.057 kb on + strand, within MPMX26_01750at 1808.057 kb on + strand, within MPMX26_01750at 1808.129 kb on + strand, within MPMX26_01750at 1808.179 kb on + strand, within MPMX26_01750at 1808.180 kb on + strand, within MPMX26_01750at 1808.296 kb on + strand, within MPMX26_01750at 1808.296 kb on + strand, within MPMX26_01750at 1808.303 kb on + strand, within MPMX26_01750at 1808.425 kb on + strand, within MPMX26_01750at 1808.425 kb on + strand, within MPMX26_01750at 1808.432 kb on + strand, within MPMX26_01750at 1808.518 kb on + strand, within MPMX26_01750at 1808.518 kb on + strand, within MPMX26_01750at 1808.518 kb on + strand, within MPMX26_01750at 1808.518 kb on + strand, within MPMX26_01750at 1808.519 kb on + strand, within MPMX26_01750at 1808.519 kb on + strand, within MPMX26_01750at 1808.528 kb on + strand, within MPMX26_01750at 1808.531 kb on + strand, within MPMX26_01750at 1808.624 kb on + strand, within MPMX26_01750at 1808.624 kb on + strand, within MPMX26_01750at 1808.633 kb on + strand, within MPMX26_01750at 1808.687 kb on + strand, within MPMX26_01750at 1808.692 kb on + strand, within MPMX26_01750at 1808.701 kb on + strand, within MPMX26_01750at 1808.701 kb on + strand, within MPMX26_01750at 1808.711 kb on + strand, within MPMX26_01750at 1808.711 kb on + strand, within MPMX26_01750at 1808.711 kb on + strand, within MPMX26_01750at 1808.722 kb on + strand, within MPMX26_01750at 1808.839 kb on + strand, within MPMX26_01750at 1809.017 kb on + strandat 1809.025 kb on + strandat 1809.025 kb on + strandat 1809.425 kb on - strand, within MPMX26_01751at 1809.583 kb on + strand, within MPMX26_01751at 1809.962 kb on + strand, within MPMX26_01752

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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1,806,594 - MPMX26_01749 0.48 -0.1
1,806,666 - MPMX26_01749 0.53 +2.4
1,806,681 - MPMX26_01749 0.54 +0.4
1,806,696 - MPMX26_01749 0.55 +0.0
1,806,701 - MPMX26_01749 0.55 +0.4
1,806,725 - MPMX26_01749 0.57 -0.9
1,806,741 - MPMX26_01749 0.58 -0.4
1,806,755 - MPMX26_01749 0.59 -0.3
1,806,755 - MPMX26_01749 0.59 -0.0
1,806,813 - MPMX26_01749 0.63 +0.0
1,806,813 - MPMX26_01749 0.63 +0.9
1,806,813 - MPMX26_01749 0.63 -0.0
1,806,813 - MPMX26_01749 0.63 +0.4
1,806,866 - MPMX26_01749 0.67 -0.4
1,806,906 - MPMX26_01749 0.70 -0.7
1,806,914 - MPMX26_01749 0.71 -0.3
1,806,938 - MPMX26_01749 0.72 +1.0
1,806,996 - MPMX26_01749 0.77 +0.4
1,807,029 - MPMX26_01749 0.79 +0.2
1,807,029 - MPMX26_01749 0.79 -0.1
1,807,073 - MPMX26_01749 0.82 +0.1
1,807,073 - MPMX26_01749 0.82 +0.3
1,807,082 - MPMX26_01749 0.83 -0.3
1,807,082 - MPMX26_01749 0.83 -0.0
1,807,082 - MPMX26_01749 0.83 +0.8
1,807,082 - MPMX26_01749 0.83 +0.1
1,807,082 - MPMX26_01749 0.83 +0.1
1,807,082 - MPMX26_01749 0.83 +1.2
1,807,082 - MPMX26_01749 0.83 -1.3
1,807,082 - MPMX26_01749 0.83 -0.8
1,807,082 - MPMX26_01749 0.83 +2.1
1,807,082 - MPMX26_01749 0.83 -0.3
1,807,082 - MPMX26_01749 0.83 +0.2
1,807,082 - MPMX26_01749 0.83 -0.0
1,807,095 - MPMX26_01749 0.84 +0.6
1,807,100 - MPMX26_01749 0.84 +1.0
1,807,178 - MPMX26_01749 0.90 +0.5
1,807,194 - -0.6
1,807,858 + MPMX26_01750 0.20 +1.5
1,807,858 + MPMX26_01750 0.20 +0.6
1,807,883 + MPMX26_01750 0.22 -0.2
1,807,972 + MPMX26_01750 0.27 -0.6
1,808,044 + MPMX26_01750 0.32 +0.2
1,808,057 + MPMX26_01750 0.33 +0.6
1,808,057 + MPMX26_01750 0.33 +1.1
1,808,057 + MPMX26_01750 0.33 +0.1
1,808,057 + MPMX26_01750 0.33 -0.2
1,808,129 + MPMX26_01750 0.38 +0.1
1,808,179 + MPMX26_01750 0.41 -0.0
1,808,180 + MPMX26_01750 0.41 +0.3
1,808,296 + MPMX26_01750 0.49 +0.5
1,808,296 + MPMX26_01750 0.49 +0.3
1,808,303 + MPMX26_01750 0.50 +0.5
1,808,425 + MPMX26_01750 0.58 -0.4
1,808,425 + MPMX26_01750 0.58 +1.3
1,808,432 + MPMX26_01750 0.58 +0.1
1,808,518 + MPMX26_01750 0.64 -0.7
1,808,518 + MPMX26_01750 0.64 -1.1
1,808,518 + MPMX26_01750 0.64 +1.0
1,808,518 + MPMX26_01750 0.64 +0.4
1,808,519 + MPMX26_01750 0.64 -0.5
1,808,519 + MPMX26_01750 0.64 +2.8
1,808,528 + MPMX26_01750 0.65 -0.5
1,808,531 + MPMX26_01750 0.65 +0.2
1,808,624 + MPMX26_01750 0.71 +0.7
1,808,624 + MPMX26_01750 0.71 -0.5
1,808,633 + MPMX26_01750 0.72 -0.3
1,808,687 + MPMX26_01750 0.75 -1.5
1,808,692 + MPMX26_01750 0.76 +0.1
1,808,701 + MPMX26_01750 0.76 -0.4
1,808,701 + MPMX26_01750 0.76 -0.8
1,808,711 + MPMX26_01750 0.77 -0.1
1,808,711 + MPMX26_01750 0.77 -0.0
1,808,711 + MPMX26_01750 0.77 +0.5
1,808,722 + MPMX26_01750 0.78 +0.7
1,808,839 + MPMX26_01750 0.86 -0.1
1,809,017 + -0.9
1,809,025 + -0.1
1,809,025 + +0.6
1,809,425 - MPMX26_01751 0.34 -1.1
1,809,583 + MPMX26_01751 0.71 -0.8
1,809,962 + MPMX26_01752 0.19 -0.0

Or see this region's nucleotide sequence