Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01126

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01125 and MPMX26_01126 are separated by 69 nucleotidesMPMX26_01126 and MPMX26_01127 are separated by 18 nucleotidesMPMX26_01127 and MPMX26_01128 are separated by 34 nucleotidesMPMX26_01128 and MPMX26_01129 are separated by 147 nucleotides MPMX26_01125: MPMX26_01125 - Glyoxylate/hydroxypyruvate reductase B, at 1,194,686 to 1,195,657 _01125 MPMX26_01126: MPMX26_01126 - Beta-barrel assembly-enhancing protease, at 1,195,727 to 1,197,181 _01126 MPMX26_01127: MPMX26_01127 - putative protein YqeY, at 1,197,200 to 1,197,646 _01127 MPMX26_01128: MPMX26_01128 - 30S ribosomal protein S21, at 1,197,681 to 1,197,896 _01128 MPMX26_01129: MPMX26_01129 - tRNA N6-adenosine threonylcarbamoyltransferase, at 1,198,044 to 1,199,060 _01129 Position (kb) 1195 1196 1197 1198Strain fitness (log2 ratio) -2 -1 0 1at 1194.803 kb on + strand, within MPMX26_01125at 1194.856 kb on + strand, within MPMX26_01125at 1194.856 kb on + strand, within MPMX26_01125at 1194.862 kb on + strand, within MPMX26_01125at 1194.979 kb on + strand, within MPMX26_01125at 1195.042 kb on + strand, within MPMX26_01125at 1195.042 kb on + strand, within MPMX26_01125at 1195.066 kb on + strand, within MPMX26_01125at 1195.069 kb on + strand, within MPMX26_01125at 1195.166 kb on + strand, within MPMX26_01125at 1195.222 kb on + strand, within MPMX26_01125at 1195.337 kb on + strand, within MPMX26_01125at 1195.369 kb on + strand, within MPMX26_01125at 1195.379 kb on + strand, within MPMX26_01125at 1195.416 kb on + strand, within MPMX26_01125at 1195.421 kb on + strand, within MPMX26_01125at 1195.426 kb on + strand, within MPMX26_01125at 1195.426 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.529 kb on + strand, within MPMX26_01125at 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.606 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.846 kb on + strandat 1197.163 kb on - strandat 1197.163 kb on - strandat 1197.193 kb on - strandat 1197.193 kb on - strandat 1197.193 kb on - strandat 1197.198 kb on - strandat 1197.198 kb on - strandat 1197.242 kb on - strandat 1197.248 kb on - strand, within MPMX26_01127at 1197.268 kb on - strand, within MPMX26_01127at 1197.356 kb on - strand, within MPMX26_01127at 1197.367 kb on - strand, within MPMX26_01127at 1197.367 kb on - strand, within MPMX26_01127at 1197.367 kb on - strand, within MPMX26_01127at 1197.424 kb on - strand, within MPMX26_01127at 1197.424 kb on - strand, within MPMX26_01127at 1197.424 kb on - strand, within MPMX26_01127at 1197.455 kb on - strand, within MPMX26_01127at 1197.466 kb on - strand, within MPMX26_01127at 1197.466 kb on - strand, within MPMX26_01127at 1197.549 kb on - strand, within MPMX26_01127at 1197.596 kb on - strand, within MPMX26_01127at 1197.616 kb on - strandat 1197.994 kb on + strandat 1198.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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1,194,803 + MPMX26_01125 0.12 -0.4
1,194,856 + MPMX26_01125 0.17 -1.0
1,194,856 + MPMX26_01125 0.17 +0.6
1,194,862 + MPMX26_01125 0.18 +0.2
1,194,979 + MPMX26_01125 0.30 +0.4
1,195,042 + MPMX26_01125 0.37 +0.5
1,195,042 + MPMX26_01125 0.37 -0.2
1,195,066 + MPMX26_01125 0.39 +1.0
1,195,069 + MPMX26_01125 0.39 +0.2
1,195,166 + MPMX26_01125 0.49 +0.2
1,195,222 + MPMX26_01125 0.55 -0.5
1,195,337 + MPMX26_01125 0.67 +0.4
1,195,369 + MPMX26_01125 0.70 -1.4
1,195,379 + MPMX26_01125 0.71 -1.4
1,195,416 + MPMX26_01125 0.75 -0.9
1,195,421 + MPMX26_01125 0.76 -0.6
1,195,426 + MPMX26_01125 0.76 +0.1
1,195,426 + MPMX26_01125 0.76 +1.5
1,195,505 + MPMX26_01125 0.84 -0.6
1,195,505 + MPMX26_01125 0.84 +0.1
1,195,505 + MPMX26_01125 0.84 +0.8
1,195,529 + MPMX26_01125 0.87 +0.9
1,195,589 + +1.0
1,195,589 + +0.4
1,195,589 + +1.0
1,195,589 + +0.3
1,195,606 + +0.0
1,195,636 + -1.7
1,195,636 + +0.9
1,195,636 + -0.1
1,195,636 + -0.6
1,195,763 + -0.6
1,195,763 + -1.3
1,195,763 + -1.2
1,195,763 + +0.2
1,195,763 + -0.6
1,195,846 + +0.8
1,197,163 - -0.1
1,197,163 - +0.3
1,197,193 - +0.1
1,197,193 - -1.1
1,197,193 - -0.2
1,197,198 - +0.6
1,197,198 - +0.5
1,197,242 - +0.1
1,197,248 - MPMX26_01127 0.11 -0.1
1,197,268 - MPMX26_01127 0.15 +0.2
1,197,356 - MPMX26_01127 0.35 +0.6
1,197,367 - MPMX26_01127 0.37 -0.1
1,197,367 - MPMX26_01127 0.37 +0.1
1,197,367 - MPMX26_01127 0.37 +0.5
1,197,424 - MPMX26_01127 0.50 +0.1
1,197,424 - MPMX26_01127 0.50 +1.1
1,197,424 - MPMX26_01127 0.50 -0.3
1,197,455 - MPMX26_01127 0.57 -0.4
1,197,466 - MPMX26_01127 0.60 +0.2
1,197,466 - MPMX26_01127 0.60 +0.6
1,197,549 - MPMX26_01127 0.78 -2.4
1,197,596 - MPMX26_01127 0.89 +0.3
1,197,616 - -0.5
1,197,994 + -1.1
1,198,029 + -0.6

Or see this region's nucleotide sequence