Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01118

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01116 and MPMX26_01117 are separated by 67 nucleotidesMPMX26_01117 and MPMX26_01118 are separated by 31 nucleotidesMPMX26_01118 and MPMX26_01119 overlap by 1 nucleotidesMPMX26_01119 and MPMX26_01120 are separated by 90 nucleotides MPMX26_01116: MPMX26_01116 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 1,185,390 to 1,186,463 _01116 MPMX26_01117: MPMX26_01117 - hypothetical protein, at 1,186,531 to 1,186,986 _01117 MPMX26_01118: MPMX26_01118 - hypothetical protein, at 1,187,018 to 1,188,160 _01118 MPMX26_01119: MPMX26_01119 - hypothetical protein, at 1,188,160 to 1,188,639 _01119 MPMX26_01120: MPMX26_01120 - Dihydroorotate dehydrogenase (quinone), at 1,188,730 to 1,189,734 _01120 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -1 0 1at 1186.545 kb on + strandat 1186.554 kb on + strandat 1186.596 kb on + strand, within MPMX26_01117at 1186.596 kb on + strand, within MPMX26_01117at 1186.596 kb on + strand, within MPMX26_01117at 1186.596 kb on + strand, within MPMX26_01117at 1186.596 kb on + strand, within MPMX26_01117at 1186.596 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.611 kb on + strand, within MPMX26_01117at 1186.613 kb on + strand, within MPMX26_01117at 1186.621 kb on - strand, within MPMX26_01117at 1186.699 kb on + strand, within MPMX26_01117at 1186.744 kb on + strand, within MPMX26_01117at 1186.744 kb on + strand, within MPMX26_01117at 1186.799 kb on + strand, within MPMX26_01117at 1186.831 kb on + strand, within MPMX26_01117at 1186.831 kb on + strand, within MPMX26_01117at 1186.876 kb on + strand, within MPMX26_01117at 1186.887 kb on + strand, within MPMX26_01117at 1186.952 kb on + strandat 1186.968 kb on + strandat 1187.212 kb on + strand, within MPMX26_01118at 1187.225 kb on + strand, within MPMX26_01118at 1187.225 kb on + strand, within MPMX26_01118at 1187.252 kb on + strand, within MPMX26_01118at 1187.318 kb on + strand, within MPMX26_01118at 1187.335 kb on + strand, within MPMX26_01118at 1187.585 kb on + strand, within MPMX26_01118at 1187.620 kb on + strand, within MPMX26_01118at 1187.774 kb on + strand, within MPMX26_01118at 1187.774 kb on + strand, within MPMX26_01118at 1187.774 kb on + strand, within MPMX26_01118at 1187.774 kb on + strand, within MPMX26_01118at 1187.774 kb on + strand, within MPMX26_01118at 1187.779 kb on + strand, within MPMX26_01118at 1187.914 kb on + strand, within MPMX26_01118at 1187.929 kb on + strand, within MPMX26_01118at 1187.965 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.002 kb on + strand, within MPMX26_01118at 1188.118 kb on + strandat 1188.118 kb on + strandat 1188.118 kb on + strandat 1188.131 kb on + strandat 1188.210 kb on + strand, within MPMX26_01119at 1188.282 kb on + strand, within MPMX26_01119at 1188.282 kb on + strand, within MPMX26_01119at 1188.282 kb on + strand, within MPMX26_01119at 1188.282 kb on + strand, within MPMX26_01119at 1188.289 kb on + strand, within MPMX26_01119at 1188.303 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.304 kb on + strand, within MPMX26_01119at 1188.376 kb on + strand, within MPMX26_01119at 1188.381 kb on + strand, within MPMX26_01119at 1188.386 kb on + strand, within MPMX26_01119at 1188.457 kb on + strand, within MPMX26_01119at 1188.457 kb on + strand, within MPMX26_01119at 1188.478 kb on + strand, within MPMX26_01119at 1188.478 kb on + strand, within MPMX26_01119at 1188.478 kb on + strand, within MPMX26_01119at 1188.522 kb on + strand, within MPMX26_01119at 1188.532 kb on + strand, within MPMX26_01119at 1188.532 kb on + strand, within MPMX26_01119at 1188.543 kb on + strand, within MPMX26_01119at 1188.549 kb on + strand, within MPMX26_01119at 1188.621 kb on + strandat 1188.732 kb on + strandat 1188.732 kb on + strandat 1188.732 kb on + strandat 1188.732 kb on + strandat 1188.732 kb on + strandat 1188.837 kb on + strand, within MPMX26_01120at 1188.856 kb on + strand, within MPMX26_01120at 1188.856 kb on + strand, within MPMX26_01120at 1188.907 kb on + strand, within MPMX26_01120at 1189.035 kb on + strand, within MPMX26_01120at 1189.046 kb on + strand, within MPMX26_01120at 1189.071 kb on + strand, within MPMX26_01120

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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1,186,545 + -0.8
1,186,554 + +0.2
1,186,596 + MPMX26_01117 0.14 -1.3
1,186,596 + MPMX26_01117 0.14 +0.4
1,186,596 + MPMX26_01117 0.14 -1.4
1,186,596 + MPMX26_01117 0.14 +0.6
1,186,596 + MPMX26_01117 0.14 +0.0
1,186,596 + MPMX26_01117 0.14 -0.5
1,186,611 + MPMX26_01117 0.18 +0.7
1,186,611 + MPMX26_01117 0.18 -1.1
1,186,611 + MPMX26_01117 0.18 +0.3
1,186,611 + MPMX26_01117 0.18 +0.3
1,186,611 + MPMX26_01117 0.18 +1.1
1,186,611 + MPMX26_01117 0.18 -1.1
1,186,613 + MPMX26_01117 0.18 +1.1
1,186,621 - MPMX26_01117 0.20 +0.3
1,186,699 + MPMX26_01117 0.37 +0.9
1,186,744 + MPMX26_01117 0.47 -1.0
1,186,744 + MPMX26_01117 0.47 +0.9
1,186,799 + MPMX26_01117 0.59 +0.2
1,186,831 + MPMX26_01117 0.66 +0.1
1,186,831 + MPMX26_01117 0.66 -0.2
1,186,876 + MPMX26_01117 0.76 +0.5
1,186,887 + MPMX26_01117 0.78 +1.3
1,186,952 + +1.1
1,186,968 + +0.1
1,187,212 + MPMX26_01118 0.17 +0.5
1,187,225 + MPMX26_01118 0.18 +0.1
1,187,225 + MPMX26_01118 0.18 -0.7
1,187,252 + MPMX26_01118 0.20 +0.2
1,187,318 + MPMX26_01118 0.26 +0.1
1,187,335 + MPMX26_01118 0.28 +0.5
1,187,585 + MPMX26_01118 0.50 +0.9
1,187,620 + MPMX26_01118 0.53 +0.1
1,187,774 + MPMX26_01118 0.66 +0.4
1,187,774 + MPMX26_01118 0.66 +0.2
1,187,774 + MPMX26_01118 0.66 -0.3
1,187,774 + MPMX26_01118 0.66 +0.3
1,187,774 + MPMX26_01118 0.66 -0.6
1,187,779 + MPMX26_01118 0.67 -0.4
1,187,914 + MPMX26_01118 0.78 +0.1
1,187,929 + MPMX26_01118 0.80 +0.6
1,187,965 + MPMX26_01118 0.83 -0.4
1,188,002 + MPMX26_01118 0.86 -0.1
1,188,002 + MPMX26_01118 0.86 +1.2
1,188,002 + MPMX26_01118 0.86 +1.7
1,188,002 + MPMX26_01118 0.86 +1.1
1,188,002 + MPMX26_01118 0.86 +0.5
1,188,002 + MPMX26_01118 0.86 -0.1
1,188,002 + MPMX26_01118 0.86 +0.0
1,188,002 + MPMX26_01118 0.86 -0.0
1,188,002 + MPMX26_01118 0.86 +1.4
1,188,002 + MPMX26_01118 0.86 +0.3
1,188,118 + -0.8
1,188,118 + -1.1
1,188,118 + +0.4
1,188,131 + +0.2
1,188,210 + MPMX26_01119 0.10 +0.3
1,188,282 + MPMX26_01119 0.25 +0.7
1,188,282 + MPMX26_01119 0.25 +0.1
1,188,282 + MPMX26_01119 0.25 -0.3
1,188,282 + MPMX26_01119 0.25 +0.5
1,188,289 + MPMX26_01119 0.27 -0.0
1,188,303 + MPMX26_01119 0.30 +1.5
1,188,304 + MPMX26_01119 0.30 -0.2
1,188,304 + MPMX26_01119 0.30 +0.1
1,188,304 + MPMX26_01119 0.30 +0.8
1,188,304 + MPMX26_01119 0.30 -0.5
1,188,304 + MPMX26_01119 0.30 +0.4
1,188,304 + MPMX26_01119 0.30 +0.3
1,188,376 + MPMX26_01119 0.45 -0.3
1,188,381 + MPMX26_01119 0.46 -0.1
1,188,386 + MPMX26_01119 0.47 -0.9
1,188,457 + MPMX26_01119 0.62 +0.1
1,188,457 + MPMX26_01119 0.62 -1.6
1,188,478 + MPMX26_01119 0.66 -0.2
1,188,478 + MPMX26_01119 0.66 +0.3
1,188,478 + MPMX26_01119 0.66 +0.3
1,188,522 + MPMX26_01119 0.75 -0.5
1,188,532 + MPMX26_01119 0.78 -0.2
1,188,532 + MPMX26_01119 0.78 -0.1
1,188,543 + MPMX26_01119 0.80 +1.1
1,188,549 + MPMX26_01119 0.81 -0.1
1,188,621 + +0.4
1,188,732 + +0.1
1,188,732 + +1.1
1,188,732 + -0.2
1,188,732 + +0.1
1,188,732 + +0.5
1,188,837 + MPMX26_01120 0.11 +0.1
1,188,856 + MPMX26_01120 0.13 +1.1
1,188,856 + MPMX26_01120 0.13 +1.1
1,188,907 + MPMX26_01120 0.18 +0.5
1,189,035 + MPMX26_01120 0.30 -0.7
1,189,046 + MPMX26_01120 0.31 +0.1
1,189,071 + MPMX26_01120 0.34 +1.1

Or see this region's nucleotide sequence