Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00654

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00653 and MPMX26_00654 are separated by 41 nucleotidesMPMX26_00654 and MPMX26_00655 are separated by 20 nucleotidesMPMX26_00655 and MPMX26_00656 are separated by 3 nucleotides MPMX26_00653: MPMX26_00653 - hypothetical protein, at 697,488 to 698,147 _00653 MPMX26_00654: MPMX26_00654 - Sensor protein QseC, at 698,189 to 699,505 _00654 MPMX26_00655: MPMX26_00655 - Transcriptional regulatory protein QseB, at 699,526 to 700,203 _00655 MPMX26_00656: MPMX26_00656 - Phosphoethanolamine transferase EptA, at 700,207 to 701,871 _00656 Position (kb) 698 699 700Strain fitness (log2 ratio) -1 0 1at 698.509 kb on + strand, within MPMX26_00654at 699.255 kb on + strand, within MPMX26_00654at 699.437 kb on + strandat 700.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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698,509 + MPMX26_00654 0.24 -1.4
699,255 + MPMX26_00654 0.81 -1.4
699,437 + +0.5
700,245 + -0.6

Or see this region's nucleotide sequence