Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00160

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00159 and MPMX26_00160 are separated by 118 nucleotidesMPMX26_00160 and MPMX26_00161 are separated by 19 nucleotides MPMX26_00159: MPMX26_00159 - Lipopolysaccharide export system permease protein LptG, at 171,072 to 172,142 _00159 MPMX26_00160: MPMX26_00160 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 172,261 to 173,811 _00160 MPMX26_00161: MPMX26_00161 - putative CtpA-like serine protease, at 173,831 to 175,018 _00161 Position (kb) 172 173 174Strain fitness (log2 ratio) -1 0 1at 172.137 kb on + strandat 172.137 kb on + strandat 172.137 kb on + strandat 172.137 kb on + strandat 172.137 kb on + strandat 172.137 kb on + strandat 172.157 kb on + strandat 172.171 kb on + strandat 172.171 kb on + strandat 172.191 kb on + strandat 172.191 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strandat 173.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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172,137 + +0.2
172,137 + -0.1
172,137 + -0.2
172,137 + -0.6
172,137 + +1.7
172,137 + -0.3
172,157 + -0.4
172,171 + +0.3
172,171 + +0.5
172,191 + +1.0
172,191 + +0.3
173,796 + -0.5
173,796 + -0.3
173,796 + +0.2
173,796 + -0.3
173,796 + +0.5

Or see this region's nucleotide sequence