Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01305

Experiment: UV exposure at 150J/m2 for 10 seconds

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01303 and MPMX26_01304 are separated by 3 nucleotidesMPMX26_01304 and MPMX26_01305 are separated by 7 nucleotidesMPMX26_01305 and MPMX26_01306 are separated by 80 nucleotides MPMX26_01303: MPMX26_01303 - UDP-3-O-acylglucosamine N-acyltransferase, at 1,380,358 to 1,381,428 _01303 MPMX26_01304: MPMX26_01304 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 1,381,432 to 1,381,911 _01304 MPMX26_01305: MPMX26_01305 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 1,381,919 to 1,382,707 _01305 MPMX26_01306: MPMX26_01306 - Cell division coordinator CpoB, at 1,382,788 to 1,383,612 _01306 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -1 0 1 2 3at 1381.906 kb on + strandat 1381.906 kb on + strandat 1381.906 kb on + strandat 1381.906 kb on + strandat 1381.906 kb on + strandat 1381.906 kb on + strandat 1382.706 kb on + strandat 1382.836 kb on - strandat 1382.836 kb on - strandat 1382.836 kb on - strandat 1382.836 kb on - strandat 1382.836 kb on - strandat 1382.889 kb on - strand, within MPMX26_01306at 1382.899 kb on - strand, within MPMX26_01306at 1382.923 kb on - strand, within MPMX26_01306at 1382.940 kb on - strand, within MPMX26_01306at 1382.958 kb on - strand, within MPMX26_01306at 1383.090 kb on - strand, within MPMX26_01306at 1383.106 kb on - strand, within MPMX26_01306at 1383.126 kb on - strand, within MPMX26_01306at 1383.139 kb on - strand, within MPMX26_01306at 1383.139 kb on - strand, within MPMX26_01306at 1383.181 kb on - strand, within MPMX26_01306at 1383.181 kb on - strand, within MPMX26_01306at 1383.271 kb on - strand, within MPMX26_01306at 1383.289 kb on - strand, within MPMX26_01306at 1383.393 kb on - strand, within MPMX26_01306at 1383.400 kb on - strand, within MPMX26_01306at 1383.457 kb on - strand, within MPMX26_01306at 1383.477 kb on - strand, within MPMX26_01306at 1383.477 kb on - strand, within MPMX26_01306at 1383.505 kb on - strand, within MPMX26_01306at 1383.513 kb on - strand, within MPMX26_01306at 1383.513 kb on - strand, within MPMX26_01306at 1383.513 kb on - strand, within MPMX26_01306at 1383.513 kb on - strand, within MPMX26_01306at 1383.567 kb on - strandat 1383.567 kb on - strandat 1383.567 kb on - strandat 1383.567 kb on - strandat 1383.577 kb on - strandat 1383.577 kb on - strandat 1383.577 kb on - strandat 1383.577 kb on - strandat 1383.577 kb on - strandat 1383.577 kb on - strandat 1383.582 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
remove
1,381,906 + -0.3
1,381,906 + +0.3
1,381,906 + +0.2
1,381,906 + -1.0
1,381,906 + +0.2
1,381,906 + +0.6
1,382,706 + -0.1
1,382,836 - -0.3
1,382,836 - +0.4
1,382,836 - -0.1
1,382,836 - +0.5
1,382,836 - -0.1
1,382,889 - MPMX26_01306 0.12 -1.0
1,382,899 - MPMX26_01306 0.13 -1.0
1,382,923 - MPMX26_01306 0.16 -0.4
1,382,940 - MPMX26_01306 0.18 +0.1
1,382,958 - MPMX26_01306 0.21 -0.1
1,383,090 - MPMX26_01306 0.37 +0.5
1,383,106 - MPMX26_01306 0.39 -0.4
1,383,126 - MPMX26_01306 0.41 -1.0
1,383,139 - MPMX26_01306 0.43 -0.1
1,383,139 - MPMX26_01306 0.43 +0.2
1,383,181 - MPMX26_01306 0.48 -1.0
1,383,181 - MPMX26_01306 0.48 +0.2
1,383,271 - MPMX26_01306 0.59 +3.2
1,383,289 - MPMX26_01306 0.61 -0.1
1,383,393 - MPMX26_01306 0.73 -0.3
1,383,400 - MPMX26_01306 0.74 -0.2
1,383,457 - MPMX26_01306 0.81 -0.5
1,383,477 - MPMX26_01306 0.84 -1.0
1,383,477 - MPMX26_01306 0.84 -0.1
1,383,505 - MPMX26_01306 0.87 -0.1
1,383,513 - MPMX26_01306 0.88 -0.7
1,383,513 - MPMX26_01306 0.88 +2.2
1,383,513 - MPMX26_01306 0.88 -1.1
1,383,513 - MPMX26_01306 0.88 +0.6
1,383,567 - +0.2
1,383,567 - -1.4
1,383,567 - +0.0
1,383,567 - -0.7
1,383,577 - -0.4
1,383,577 - +0.0
1,383,577 - -1.0
1,383,577 - -0.1
1,383,577 - +0.2
1,383,577 - -1.0
1,383,582 - -1.2

Or see this region's nucleotide sequence