Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01015

Experiment: UV exposure at 150J/m2 for 10 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01014 and MPMX26_01015 are separated by 525 nucleotidesMPMX26_01015 and MPMX26_01016 are separated by 153 nucleotides MPMX26_01014: MPMX26_01014 - putative isomerase YddE, at 1,070,165 to 1,070,992 _01014 MPMX26_01015: MPMX26_01015 - L-cystine uptake protein TcyP, at 1,071,518 to 1,072,909 _01015 MPMX26_01016: MPMX26_01016 - hypothetical protein, at 1,073,063 to 1,075,834 _01016 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -2 -1 0 1 2at 1070.692 kb on + strand, within MPMX26_01014at 1070.692 kb on + strand, within MPMX26_01014at 1070.782 kb on + strand, within MPMX26_01014at 1070.795 kb on + strand, within MPMX26_01014at 1070.839 kb on + strand, within MPMX26_01014at 1070.903 kb on + strand, within MPMX26_01014at 1070.903 kb on + strand, within MPMX26_01014at 1070.959 kb on + strandat 1071.565 kb on + strandat 1071.583 kb on + strandat 1071.653 kb on + strandat 1071.653 kb on + strandat 1071.665 kb on + strand, within MPMX26_01015at 1071.709 kb on + strand, within MPMX26_01015at 1071.781 kb on + strand, within MPMX26_01015at 1071.781 kb on + strand, within MPMX26_01015at 1071.781 kb on + strand, within MPMX26_01015at 1071.781 kb on + strand, within MPMX26_01015at 1071.917 kb on + strand, within MPMX26_01015at 1071.928 kb on + strand, within MPMX26_01015at 1071.928 kb on + strand, within MPMX26_01015at 1071.928 kb on + strand, within MPMX26_01015at 1071.962 kb on + strand, within MPMX26_01015at 1072.016 kb on + strand, within MPMX26_01015at 1072.054 kb on + strand, within MPMX26_01015at 1072.054 kb on + strand, within MPMX26_01015at 1072.059 kb on + strand, within MPMX26_01015at 1072.064 kb on + strand, within MPMX26_01015at 1072.109 kb on + strand, within MPMX26_01015at 1072.118 kb on + strand, within MPMX26_01015at 1072.172 kb on + strand, within MPMX26_01015at 1072.259 kb on + strand, within MPMX26_01015at 1072.409 kb on + strand, within MPMX26_01015at 1072.412 kb on + strand, within MPMX26_01015at 1072.412 kb on + strand, within MPMX26_01015at 1072.412 kb on + strand, within MPMX26_01015at 1072.449 kb on + strand, within MPMX26_01015at 1072.524 kb on + strand, within MPMX26_01015at 1072.559 kb on + strand, within MPMX26_01015at 1072.583 kb on + strand, within MPMX26_01015at 1072.606 kb on + strand, within MPMX26_01015at 1072.642 kb on + strand, within MPMX26_01015at 1072.786 kb on + strandat 1072.786 kb on + strandat 1072.786 kb on + strandat 1072.829 kb on + strandat 1072.838 kb on + strandat 1073.179 kb on + strandat 1073.179 kb on + strandat 1073.228 kb on + strandat 1073.339 kb on + strandat 1073.372 kb on + strand, within MPMX26_01016at 1073.386 kb on + strand, within MPMX26_01016at 1073.386 kb on + strand, within MPMX26_01016at 1073.386 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.398 kb on + strand, within MPMX26_01016at 1073.416 kb on + strand, within MPMX26_01016at 1073.456 kb on + strand, within MPMX26_01016at 1073.474 kb on + strand, within MPMX26_01016at 1073.558 kb on + strand, within MPMX26_01016at 1073.558 kb on + strand, within MPMX26_01016at 1073.558 kb on + strand, within MPMX26_01016at 1073.558 kb on + strand, within MPMX26_01016at 1073.558 kb on + strand, within MPMX26_01016at 1073.563 kb on + strand, within MPMX26_01016at 1073.563 kb on + strand, within MPMX26_01016at 1073.563 kb on + strand, within MPMX26_01016at 1073.563 kb on + strand, within MPMX26_01016at 1073.611 kb on + strand, within MPMX26_01016at 1073.611 kb on + strand, within MPMX26_01016at 1073.611 kb on + strand, within MPMX26_01016at 1073.611 kb on + strand, within MPMX26_01016at 1073.776 kb on + strand, within MPMX26_01016at 1073.776 kb on + strand, within MPMX26_01016

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 10 seconds
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1,070,692 + MPMX26_01014 0.64 -0.9
1,070,692 + MPMX26_01014 0.64 +0.0
1,070,782 + MPMX26_01014 0.75 +0.1
1,070,795 + MPMX26_01014 0.76 -2.0
1,070,839 + MPMX26_01014 0.81 +1.0
1,070,903 + MPMX26_01014 0.89 +1.0
1,070,903 + MPMX26_01014 0.89 +0.6
1,070,959 + -0.0
1,071,565 + +0.1
1,071,583 + +0.0
1,071,653 + -0.9
1,071,653 + +0.0
1,071,665 + MPMX26_01015 0.11 -0.3
1,071,709 + MPMX26_01015 0.14 -0.1
1,071,781 + MPMX26_01015 0.19 -1.3
1,071,781 + MPMX26_01015 0.19 -0.3
1,071,781 + MPMX26_01015 0.19 +0.7
1,071,781 + MPMX26_01015 0.19 -0.1
1,071,917 + MPMX26_01015 0.29 +0.8
1,071,928 + MPMX26_01015 0.29 +0.4
1,071,928 + MPMX26_01015 0.29 +0.1
1,071,928 + MPMX26_01015 0.29 -0.2
1,071,962 + MPMX26_01015 0.32 +0.1
1,072,016 + MPMX26_01015 0.36 +0.5
1,072,054 + MPMX26_01015 0.39 +0.0
1,072,054 + MPMX26_01015 0.39 +0.7
1,072,059 + MPMX26_01015 0.39 -0.7
1,072,064 + MPMX26_01015 0.39 +0.1
1,072,109 + MPMX26_01015 0.42 -0.2
1,072,118 + MPMX26_01015 0.43 -0.5
1,072,172 + MPMX26_01015 0.47 -0.3
1,072,259 + MPMX26_01015 0.53 -0.4
1,072,409 + MPMX26_01015 0.64 +0.0
1,072,412 + MPMX26_01015 0.64 +0.3
1,072,412 + MPMX26_01015 0.64 +0.2
1,072,412 + MPMX26_01015 0.64 +0.0
1,072,449 + MPMX26_01015 0.67 +2.0
1,072,524 + MPMX26_01015 0.72 +0.1
1,072,559 + MPMX26_01015 0.75 -0.2
1,072,583 + MPMX26_01015 0.77 +0.5
1,072,606 + MPMX26_01015 0.78 -0.3
1,072,642 + MPMX26_01015 0.81 -0.3
1,072,786 + +0.1
1,072,786 + +0.4
1,072,786 + -1.0
1,072,829 + +0.3
1,072,838 + +0.2
1,073,179 + +0.1
1,073,179 + +0.5
1,073,228 + +0.5
1,073,339 + -0.5
1,073,372 + MPMX26_01016 0.11 -1.3
1,073,386 + MPMX26_01016 0.12 -0.2
1,073,386 + MPMX26_01016 0.12 -0.8
1,073,386 + MPMX26_01016 0.12 -0.2
1,073,398 + MPMX26_01016 0.12 +0.4
1,073,398 + MPMX26_01016 0.12 -0.6
1,073,398 + MPMX26_01016 0.12 -0.4
1,073,398 + MPMX26_01016 0.12 +1.3
1,073,398 + MPMX26_01016 0.12 -0.2
1,073,398 + MPMX26_01016 0.12 +0.1
1,073,398 + MPMX26_01016 0.12 -0.2
1,073,416 + MPMX26_01016 0.13 -0.3
1,073,456 + MPMX26_01016 0.14 -0.4
1,073,474 + MPMX26_01016 0.15 -0.2
1,073,558 + MPMX26_01016 0.18 +0.4
1,073,558 + MPMX26_01016 0.18 -0.0
1,073,558 + MPMX26_01016 0.18 +0.2
1,073,558 + MPMX26_01016 0.18 -0.1
1,073,558 + MPMX26_01016 0.18 -1.2
1,073,563 + MPMX26_01016 0.18 +0.9
1,073,563 + MPMX26_01016 0.18 -0.4
1,073,563 + MPMX26_01016 0.18 +0.6
1,073,563 + MPMX26_01016 0.18 +0.1
1,073,611 + MPMX26_01016 0.20 -0.2
1,073,611 + MPMX26_01016 0.20 +0.7
1,073,611 + MPMX26_01016 0.20 -0.1
1,073,611 + MPMX26_01016 0.20 -0.7
1,073,776 + MPMX26_01016 0.26 +0.6
1,073,776 + MPMX26_01016 0.26 +0.9

Or see this region's nucleotide sequence