Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03068

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03067 and MPMX26_03068 are separated by 52 nucleotidesMPMX26_03068 and MPMX26_03069 are separated by 175 nucleotides MPMX26_03067: MPMX26_03067 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 3,189,630 to 3,190,601 _03067 MPMX26_03068: MPMX26_03068 - Transcriptional repressor RcnR, at 3,190,654 to 3,190,917 _03068 MPMX26_03069: MPMX26_03069 - hypothetical protein, at 3,191,093 to 3,192,235 _03069 Position (kb) 3190 3191Strain fitness (log2 ratio) -2 -1 0 1at 3189.714 kb on - strandat 3189.714 kb on - strandat 3189.890 kb on - strand, within MPMX26_03067at 3189.920 kb on - strand, within MPMX26_03067at 3189.939 kb on - strand, within MPMX26_03067at 3190.148 kb on - strand, within MPMX26_03067at 3190.461 kb on - strand, within MPMX26_03067at 3190.514 kb on - strandat 3190.522 kb on - strandat 3190.522 kb on - strandat 3190.546 kb on + strandat 3190.554 kb on - strandat 3190.701 kb on + strand, within MPMX26_03068at 3190.701 kb on + strand, within MPMX26_03068at 3190.713 kb on + strand, within MPMX26_03068at 3190.713 kb on + strand, within MPMX26_03068at 3190.713 kb on + strand, within MPMX26_03068at 3190.732 kb on + strand, within MPMX26_03068at 3190.765 kb on + strand, within MPMX26_03068at 3190.783 kb on + strand, within MPMX26_03068at 3190.821 kb on + strand, within MPMX26_03068at 3190.821 kb on + strand, within MPMX26_03068at 3190.821 kb on + strand, within MPMX26_03068at 3191.028 kb on + strandat 3191.039 kb on + strandat 3191.100 kb on + strandat 3191.114 kb on + strandat 3191.122 kb on + strandat 3191.216 kb on + strand, within MPMX26_03069at 3191.226 kb on + strand, within MPMX26_03069at 3191.285 kb on + strand, within MPMX26_03069at 3191.390 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.395 kb on + strand, within MPMX26_03069at 3191.459 kb on + strand, within MPMX26_03069at 3191.498 kb on + strand, within MPMX26_03069at 3191.840 kb on - strand, within MPMX26_03069at 3191.864 kb on + strand, within MPMX26_03069

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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3,189,714 - -0.6
3,189,714 - +0.6
3,189,890 - MPMX26_03067 0.27 +1.5
3,189,920 - MPMX26_03067 0.30 +0.2
3,189,939 - MPMX26_03067 0.32 -0.7
3,190,148 - MPMX26_03067 0.53 +1.0
3,190,461 - MPMX26_03067 0.85 +0.7
3,190,514 - -1.1
3,190,522 - -0.1
3,190,522 - -0.2
3,190,546 + +0.5
3,190,554 - +0.3
3,190,701 + MPMX26_03068 0.18 -0.4
3,190,701 + MPMX26_03068 0.18 -0.3
3,190,713 + MPMX26_03068 0.22 -0.3
3,190,713 + MPMX26_03068 0.22 +0.3
3,190,713 + MPMX26_03068 0.22 +0.4
3,190,732 + MPMX26_03068 0.30 +0.2
3,190,765 + MPMX26_03068 0.42 -0.2
3,190,783 + MPMX26_03068 0.49 +0.4
3,190,821 + MPMX26_03068 0.63 +1.0
3,190,821 + MPMX26_03068 0.63 +0.2
3,190,821 + MPMX26_03068 0.63 +1.0
3,191,028 + -0.1
3,191,039 + -0.3
3,191,100 + +0.0
3,191,114 + +0.1
3,191,122 + -0.1
3,191,216 + MPMX26_03069 0.11 -0.1
3,191,226 + MPMX26_03069 0.12 -0.0
3,191,285 + MPMX26_03069 0.17 +0.3
3,191,390 + MPMX26_03069 0.26 +0.8
3,191,395 + MPMX26_03069 0.26 -0.7
3,191,395 + MPMX26_03069 0.26 +0.6
3,191,395 + MPMX26_03069 0.26 +1.5
3,191,395 + MPMX26_03069 0.26 -0.7
3,191,395 + MPMX26_03069 0.26 -2.0
3,191,395 + MPMX26_03069 0.26 +0.5
3,191,395 + MPMX26_03069 0.26 +1.2
3,191,459 + MPMX26_03069 0.32 +0.2
3,191,498 + MPMX26_03069 0.35 +0.0
3,191,840 - MPMX26_03069 0.65 +0.2
3,191,864 + MPMX26_03069 0.67 +0.4

Or see this region's nucleotide sequence