Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02885

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02884 and MPMX26_02885 are separated by 313 nucleotidesMPMX26_02885 and MPMX26_02886 are separated by 276 nucleotidesMPMX26_02886 and MPMX26_02887 are separated by 76 nucleotides MPMX26_02884: MPMX26_02884 - Catalase HPII, at 2,984,143 to 2,986,266 _02884 MPMX26_02885: MPMX26_02885 - hypothetical protein, at 2,986,580 to 2,987,224 _02885 MPMX26_02886: MPMX26_02886 - hypothetical protein, at 2,987,501 to 2,987,827 _02886 MPMX26_02887: MPMX26_02887 - General stress protein 39, at 2,987,904 to 2,988,770 _02887 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -1 0 1 2at 2985.607 kb on + strand, within MPMX26_02884at 2985.812 kb on + strand, within MPMX26_02884at 2985.826 kb on + strand, within MPMX26_02884at 2985.862 kb on + strand, within MPMX26_02884at 2985.900 kb on + strand, within MPMX26_02884at 2985.972 kb on + strand, within MPMX26_02884at 2986.137 kb on - strandat 2986.147 kb on + strandat 2986.168 kb on + strandat 2986.176 kb on + strandat 2986.186 kb on + strandat 2986.195 kb on + strandat 2986.202 kb on + strandat 2986.202 kb on + strandat 2986.212 kb on + strandat 2986.828 kb on + strand, within MPMX26_02885at 2987.011 kb on - strand, within MPMX26_02885at 2987.504 kb on - strandat 2987.619 kb on + strand, within MPMX26_02886at 2987.706 kb on + strand, within MPMX26_02886at 2987.771 kb on + strand, within MPMX26_02886at 2988.099 kb on + strand, within MPMX26_02887

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,985,607 + MPMX26_02884 0.69 +0.2
2,985,812 + MPMX26_02884 0.79 +0.8
2,985,826 + MPMX26_02884 0.79 -0.2
2,985,862 + MPMX26_02884 0.81 -0.1
2,985,900 + MPMX26_02884 0.83 +0.9
2,985,972 + MPMX26_02884 0.86 +1.5
2,986,137 - +2.2
2,986,147 + +0.6
2,986,168 + -0.4
2,986,176 + +0.6
2,986,186 + +1.2
2,986,195 + -0.5
2,986,202 + +0.9
2,986,202 + +0.2
2,986,212 + -1.0
2,986,828 + MPMX26_02885 0.38 -0.1
2,987,011 - MPMX26_02885 0.67 -0.6
2,987,504 - -1.3
2,987,619 + MPMX26_02886 0.36 +1.5
2,987,706 + MPMX26_02886 0.63 -0.3
2,987,771 + MPMX26_02886 0.83 -0.8
2,988,099 + MPMX26_02887 0.22 +0.5

Or see this region's nucleotide sequence