Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02576

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02574 and MPMX26_02575 are separated by 13 nucleotidesMPMX26_02575 and MPMX26_02576 are separated by 135 nucleotidesMPMX26_02576 and MPMX26_02577 are separated by 23 nucleotidesMPMX26_02577 and MPMX26_02578 are separated by 103 nucleotides MPMX26_02574: MPMX26_02574 - Undecaprenyl-diphosphatase, at 2,666,562 to 2,667,386 _02574 MPMX26_02575: MPMX26_02575 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 2,667,400 to 2,668,065 _02575 MPMX26_02576: MPMX26_02576 - Protein YrdA, at 2,668,201 to 2,668,731 _02576 MPMX26_02577: MPMX26_02577 - putative Nudix hydrolase NudL, at 2,668,755 to 2,669,360 _02577 MPMX26_02578: MPMX26_02578 - NADH pyrophosphatase, at 2,669,464 to 2,670,039 _02578 Position (kb) 2668 2669Strain fitness (log2 ratio) -1 0 1 2at 2667.207 kb on - strand, within MPMX26_02574at 2667.233 kb on - strand, within MPMX26_02574at 2667.253 kb on - strand, within MPMX26_02574at 2667.349 kb on - strandat 2667.369 kb on - strandat 2667.369 kb on - strandat 2667.388 kb on - strandat 2667.411 kb on - strandat 2667.412 kb on - strandat 2667.417 kb on - strandat 2668.112 kb on - strandat 2668.222 kb on - strandat 2668.232 kb on - strandat 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.255 kb on - strand, within MPMX26_02576at 2668.447 kb on + strand, within MPMX26_02576at 2668.455 kb on - strand, within MPMX26_02576at 2668.464 kb on - strand, within MPMX26_02576at 2668.465 kb on - strand, within MPMX26_02576at 2668.537 kb on - strand, within MPMX26_02576at 2668.537 kb on - strand, within MPMX26_02576at 2668.539 kb on - strand, within MPMX26_02576at 2668.539 kb on - strand, within MPMX26_02576at 2668.605 kb on - strand, within MPMX26_02576at 2668.642 kb on - strand, within MPMX26_02576at 2668.642 kb on - strand, within MPMX26_02576at 2668.671 kb on - strand, within MPMX26_02576at 2668.671 kb on - strand, within MPMX26_02576at 2668.687 kb on - strandat 2668.687 kb on - strandat 2668.687 kb on - strandat 2668.687 kb on - strandat 2668.833 kb on - strand, within MPMX26_02577at 2668.833 kb on - strand, within MPMX26_02577at 2669.085 kb on - strand, within MPMX26_02577at 2669.093 kb on + strand, within MPMX26_02577at 2669.150 kb on + strand, within MPMX26_02577at 2669.204 kb on - strand, within MPMX26_02577at 2669.212 kb on - strand, within MPMX26_02577at 2669.254 kb on - strand, within MPMX26_02577at 2669.265 kb on - strand, within MPMX26_02577at 2669.294 kb on - strand, within MPMX26_02577at 2669.618 kb on + strand, within MPMX26_02578at 2669.618 kb on + strand, within MPMX26_02578at 2669.618 kb on + strand, within MPMX26_02578at 2669.646 kb on + strand, within MPMX26_02578at 2669.660 kb on + strand, within MPMX26_02578at 2669.660 kb on + strand, within MPMX26_02578at 2669.660 kb on + strand, within MPMX26_02578at 2669.670 kb on + strand, within MPMX26_02578at 2669.679 kb on + strand, within MPMX26_02578at 2669.679 kb on + strand, within MPMX26_02578at 2669.679 kb on + strand, within MPMX26_02578at 2669.720 kb on + strand, within MPMX26_02578at 2669.722 kb on + strand, within MPMX26_02578at 2669.730 kb on + strand, within MPMX26_02578

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,667,207 - MPMX26_02574 0.78 -0.7
2,667,233 - MPMX26_02574 0.81 -0.2
2,667,253 - MPMX26_02574 0.84 -0.3
2,667,349 - -0.8
2,667,369 - -0.0
2,667,369 - -0.2
2,667,388 - -0.2
2,667,411 - +0.1
2,667,412 - +0.5
2,667,417 - -0.1
2,668,112 - +0.2
2,668,222 - +0.1
2,668,232 - +0.7
2,668,255 - MPMX26_02576 0.10 -0.0
2,668,255 - MPMX26_02576 0.10 +0.5
2,668,255 - MPMX26_02576 0.10 -0.3
2,668,255 - MPMX26_02576 0.10 +0.6
2,668,255 - MPMX26_02576 0.10 -0.1
2,668,255 - MPMX26_02576 0.10 +0.6
2,668,255 - MPMX26_02576 0.10 +0.2
2,668,255 - MPMX26_02576 0.10 +0.4
2,668,447 + MPMX26_02576 0.46 -1.3
2,668,455 - MPMX26_02576 0.48 -0.3
2,668,464 - MPMX26_02576 0.50 +0.1
2,668,465 - MPMX26_02576 0.50 -0.5
2,668,537 - MPMX26_02576 0.63 +0.8
2,668,537 - MPMX26_02576 0.63 +0.8
2,668,539 - MPMX26_02576 0.64 +1.9
2,668,539 - MPMX26_02576 0.64 +1.2
2,668,605 - MPMX26_02576 0.76 +1.5
2,668,642 - MPMX26_02576 0.83 +0.1
2,668,642 - MPMX26_02576 0.83 +0.3
2,668,671 - MPMX26_02576 0.89 +1.5
2,668,671 - MPMX26_02576 0.89 -0.3
2,668,687 - +0.3
2,668,687 - +1.3
2,668,687 - -1.7
2,668,687 - +0.5
2,668,833 - MPMX26_02577 0.13 +0.9
2,668,833 - MPMX26_02577 0.13 +0.6
2,669,085 - MPMX26_02577 0.54 +0.7
2,669,093 + MPMX26_02577 0.56 +0.9
2,669,150 + MPMX26_02577 0.65 -0.5
2,669,204 - MPMX26_02577 0.74 +0.9
2,669,212 - MPMX26_02577 0.75 +0.7
2,669,254 - MPMX26_02577 0.82 +0.5
2,669,265 - MPMX26_02577 0.84 +0.2
2,669,294 - MPMX26_02577 0.89 -0.7
2,669,618 + MPMX26_02578 0.27 -0.6
2,669,618 + MPMX26_02578 0.27 +0.5
2,669,618 + MPMX26_02578 0.27 +0.2
2,669,646 + MPMX26_02578 0.32 -0.9
2,669,660 + MPMX26_02578 0.34 +0.1
2,669,660 + MPMX26_02578 0.34 -1.3
2,669,660 + MPMX26_02578 0.34 -1.6
2,669,670 + MPMX26_02578 0.36 -0.1
2,669,679 + MPMX26_02578 0.37 -0.4
2,669,679 + MPMX26_02578 0.37 -1.3
2,669,679 + MPMX26_02578 0.37 -0.4
2,669,720 + MPMX26_02578 0.44 +0.7
2,669,722 + MPMX26_02578 0.45 +0.1
2,669,730 + MPMX26_02578 0.46 -0.3

Or see this region's nucleotide sequence