Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02504

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02500 and MPMX26_02501 are separated by 45 nucleotidesMPMX26_02501 and MPMX26_02502 are separated by 24 nucleotidesMPMX26_02502 and MPMX26_02503 are separated by 228 nucleotidesMPMX26_02503 and MPMX26_02504 are separated by 3 nucleotidesMPMX26_02504 and MPMX26_02505 are separated by 105 nucleotides MPMX26_02500: MPMX26_02500 - tRNA-Asp, at 2,584,872 to 2,584,948 _02500 MPMX26_02501: MPMX26_02501 - tRNA-Asp, at 2,584,994 to 2,585,070 _02501 MPMX26_02502: MPMX26_02502 - tRNA-Val, at 2,585,095 to 2,585,170 _02502 MPMX26_02503: MPMX26_02503 - hypothetical protein, at 2,585,399 to 2,585,908 _02503 MPMX26_02504: MPMX26_02504 - Inner membrane protein YbaN, at 2,585,912 to 2,586,319 _02504 MPMX26_02505: MPMX26_02505 - hypothetical protein, at 2,586,425 to 2,587,294 _02505 Position (kb) 2585 2586 2587Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2585.379 kb on - strandat 2585.424 kb on - strandat 2585.447 kb on - strandat 2585.479 kb on - strand, within MPMX26_02503at 2585.494 kb on - strand, within MPMX26_02503at 2585.515 kb on - strand, within MPMX26_02503at 2585.525 kb on - strand, within MPMX26_02503at 2585.537 kb on - strand, within MPMX26_02503at 2585.596 kb on - strand, within MPMX26_02503at 2585.606 kb on - strand, within MPMX26_02503at 2585.626 kb on - strand, within MPMX26_02503at 2585.626 kb on - strand, within MPMX26_02503at 2585.659 kb on - strand, within MPMX26_02503at 2585.786 kb on - strand, within MPMX26_02503at 2585.786 kb on - strand, within MPMX26_02503at 2585.786 kb on - strand, within MPMX26_02503at 2585.858 kb on - strandat 2585.901 kb on - strandat 2585.956 kb on - strand, within MPMX26_02504at 2585.963 kb on - strand, within MPMX26_02504at 2585.968 kb on - strand, within MPMX26_02504at 2586.024 kb on - strand, within MPMX26_02504at 2586.045 kb on - strand, within MPMX26_02504at 2586.085 kb on - strand, within MPMX26_02504at 2586.103 kb on - strand, within MPMX26_02504at 2586.115 kb on - strand, within MPMX26_02504at 2586.115 kb on - strand, within MPMX26_02504at 2586.115 kb on - strand, within MPMX26_02504at 2586.115 kb on - strand, within MPMX26_02504at 2586.120 kb on - strand, within MPMX26_02504at 2586.143 kb on - strand, within MPMX26_02504at 2586.143 kb on - strand, within MPMX26_02504at 2586.143 kb on - strand, within MPMX26_02504at 2586.144 kb on - strand, within MPMX26_02504at 2586.202 kb on - strand, within MPMX26_02504at 2586.238 kb on - strand, within MPMX26_02504at 2586.242 kb on - strand, within MPMX26_02504at 2586.242 kb on - strand, within MPMX26_02504at 2586.297 kb on - strandat 2586.419 kb on + strandat 2586.419 kb on + strandat 2586.637 kb on + strand, within MPMX26_02505at 2586.657 kb on + strand, within MPMX26_02505at 2586.657 kb on + strand, within MPMX26_02505at 2586.657 kb on + strand, within MPMX26_02505at 2586.667 kb on + strand, within MPMX26_02505at 2586.667 kb on + strand, within MPMX26_02505at 2586.667 kb on + strand, within MPMX26_02505at 2586.667 kb on + strand, within MPMX26_02505at 2586.667 kb on + strand, within MPMX26_02505at 2586.719 kb on - strand, within MPMX26_02505at 2586.755 kb on + strand, within MPMX26_02505at 2586.905 kb on + strand, within MPMX26_02505at 2587.022 kb on + strand, within MPMX26_02505at 2587.066 kb on - strand, within MPMX26_02505at 2587.201 kb on - strand, within MPMX26_02505at 2587.212 kb on + strandat 2587.243 kb on + strandat 2587.260 kb on - strandat 2587.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,585,379 - +2.8
2,585,424 - -1.0
2,585,447 - -2.2
2,585,479 - MPMX26_02503 0.16 +0.6
2,585,494 - MPMX26_02503 0.19 -2.1
2,585,515 - MPMX26_02503 0.23 -0.7
2,585,525 - MPMX26_02503 0.25 -0.3
2,585,537 - MPMX26_02503 0.27 -1.4
2,585,596 - MPMX26_02503 0.39 -0.9
2,585,606 - MPMX26_02503 0.41 -0.0
2,585,626 - MPMX26_02503 0.45 -0.8
2,585,626 - MPMX26_02503 0.45 +0.6
2,585,659 - MPMX26_02503 0.51 -0.3
2,585,786 - MPMX26_02503 0.76 +0.0
2,585,786 - MPMX26_02503 0.76 -0.4
2,585,786 - MPMX26_02503 0.76 +0.6
2,585,858 - +0.1
2,585,901 - +0.3
2,585,956 - MPMX26_02504 0.11 +0.1
2,585,963 - MPMX26_02504 0.12 -0.6
2,585,968 - MPMX26_02504 0.14 -0.9
2,586,024 - MPMX26_02504 0.27 +0.4
2,586,045 - MPMX26_02504 0.33 +0.0
2,586,085 - MPMX26_02504 0.42 -0.5
2,586,103 - MPMX26_02504 0.47 -2.1
2,586,115 - MPMX26_02504 0.50 +0.2
2,586,115 - MPMX26_02504 0.50 -0.1
2,586,115 - MPMX26_02504 0.50 -0.6
2,586,115 - MPMX26_02504 0.50 -0.1
2,586,120 - MPMX26_02504 0.51 -0.1
2,586,143 - MPMX26_02504 0.57 +0.0
2,586,143 - MPMX26_02504 0.57 -0.1
2,586,143 - MPMX26_02504 0.57 -0.3
2,586,144 - MPMX26_02504 0.57 +0.3
2,586,202 - MPMX26_02504 0.71 +0.0
2,586,238 - MPMX26_02504 0.80 -0.1
2,586,242 - MPMX26_02504 0.81 +0.5
2,586,242 - MPMX26_02504 0.81 -2.1
2,586,297 - +0.9
2,586,419 + -1.3
2,586,419 + -1.7
2,586,637 + MPMX26_02505 0.24 -1.1
2,586,657 + MPMX26_02505 0.27 +0.2
2,586,657 + MPMX26_02505 0.27 +0.6
2,586,657 + MPMX26_02505 0.27 +0.5
2,586,667 + MPMX26_02505 0.28 +0.2
2,586,667 + MPMX26_02505 0.28 +0.6
2,586,667 + MPMX26_02505 0.28 +0.0
2,586,667 + MPMX26_02505 0.28 +0.5
2,586,667 + MPMX26_02505 0.28 +2.5
2,586,719 - MPMX26_02505 0.34 +1.3
2,586,755 + MPMX26_02505 0.38 +0.2
2,586,905 + MPMX26_02505 0.55 -0.0
2,587,022 + MPMX26_02505 0.69 -1.1
2,587,066 - MPMX26_02505 0.74 +2.9
2,587,201 - MPMX26_02505 0.89 -0.5
2,587,212 + +0.2
2,587,243 + -0.1
2,587,260 - -0.2
2,587,279 - +1.6

Or see this region's nucleotide sequence