Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02497

Experiment: no UV control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02495 and MPMX26_02496 are separated by 58 nucleotidesMPMX26_02496 and MPMX26_02497 are separated by 76 nucleotidesMPMX26_02497 and MPMX26_02498 are separated by 102 nucleotidesMPMX26_02498 and MPMX26_02499 are separated by 43 nucleotidesMPMX26_02499 and MPMX26_02500 are separated by 19 nucleotidesMPMX26_02500 and MPMX26_02501 are separated by 45 nucleotidesMPMX26_02501 and MPMX26_02502 are separated by 24 nucleotidesMPMX26_02502 and MPMX26_02503 are separated by 228 nucleotides MPMX26_02495: MPMX26_02495 - Acetyl-CoA acetyltransferase, at 2,582,707 to 2,583,882 _02495 MPMX26_02496: MPMX26_02496 - hypothetical protein, at 2,583,941 to 2,584,402 _02496 MPMX26_02497: MPMX26_02497 - tRNA-Val, at 2,584,479 to 2,584,554 _02497 MPMX26_02498: MPMX26_02498 - tRNA-Asp, at 2,584,657 to 2,584,733 _02498 MPMX26_02499: MPMX26_02499 - tRNA-Val, at 2,584,777 to 2,584,852 _02499 MPMX26_02500: MPMX26_02500 - tRNA-Asp, at 2,584,872 to 2,584,948 _02500 MPMX26_02501: MPMX26_02501 - tRNA-Asp, at 2,584,994 to 2,585,070 _02501 MPMX26_02502: MPMX26_02502 - tRNA-Val, at 2,585,095 to 2,585,170 _02502 MPMX26_02503: MPMX26_02503 - hypothetical protein, at 2,585,399 to 2,585,908 _02503 Position (kb) 2584 2585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2583.506 kb on + strand, within MPMX26_02495at 2583.507 kb on + strand, within MPMX26_02495at 2583.562 kb on + strand, within MPMX26_02495at 2583.598 kb on + strand, within MPMX26_02495at 2583.598 kb on + strand, within MPMX26_02495at 2583.628 kb on + strand, within MPMX26_02495at 2583.667 kb on + strand, within MPMX26_02495at 2583.667 kb on + strand, within MPMX26_02495at 2583.690 kb on + strand, within MPMX26_02495at 2583.798 kb on + strandat 2583.808 kb on + strandat 2583.808 kb on + strandat 2583.819 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2583.852 kb on + strandat 2584.095 kb on - strand, within MPMX26_02496at 2584.253 kb on - strand, within MPMX26_02496at 2584.253 kb on - strand, within MPMX26_02496at 2584.253 kb on - strand, within MPMX26_02496at 2584.253 kb on - strand, within MPMX26_02496at 2584.265 kb on - strand, within MPMX26_02496at 2584.385 kb on - strandat 2584.385 kb on - strandat 2584.395 kb on - strandat 2584.480 kb on - strandat 2584.481 kb on - strandat 2584.481 kb on - strandat 2584.493 kb on - strand, within MPMX26_02497at 2584.602 kb on - strandat 2584.635 kb on - strandat 2584.681 kb on - strand, within MPMX26_02498at 2584.681 kb on - strand, within MPMX26_02498at 2584.681 kb on - strand, within MPMX26_02498at 2584.779 kb on - strandat 2584.779 kb on - strandat 2584.781 kb on - strandat 2584.781 kb on - strandat 2584.781 kb on - strandat 2584.781 kb on - strandat 2584.781 kb on - strandat 2584.781 kb on - strandat 2584.800 kb on - strand, within MPMX26_02499at 2585.379 kb on - strandat 2585.424 kb on - strandat 2585.447 kb on - strandat 2585.479 kb on - strand, within MPMX26_02503at 2585.494 kb on - strand, within MPMX26_02503at 2585.515 kb on - strand, within MPMX26_02503at 2585.525 kb on - strand, within MPMX26_02503at 2585.537 kb on - strand, within MPMX26_02503

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
remove
2,583,506 + MPMX26_02495 0.68 -0.8
2,583,507 + MPMX26_02495 0.68 -1.4
2,583,562 + MPMX26_02495 0.73 +0.5
2,583,598 + MPMX26_02495 0.76 -0.0
2,583,598 + MPMX26_02495 0.76 -0.7
2,583,628 + MPMX26_02495 0.78 +0.5
2,583,667 + MPMX26_02495 0.82 -1.9
2,583,667 + MPMX26_02495 0.82 +1.1
2,583,690 + MPMX26_02495 0.84 -1.1
2,583,798 + -0.4
2,583,808 + +1.8
2,583,808 + -0.3
2,583,819 + -0.1
2,583,852 + +0.2
2,583,852 + +0.9
2,583,852 + -0.0
2,583,852 + -0.5
2,583,852 + -0.3
2,583,852 + -1.0
2,583,852 + +0.6
2,583,852 + +0.4
2,583,852 + +2.5
2,583,852 + +0.6
2,583,852 + +0.2
2,583,852 + -0.9
2,583,852 + -0.9
2,583,852 + -0.5
2,583,852 + +0.1
2,583,852 + +0.3
2,584,095 - MPMX26_02496 0.33 +0.7
2,584,253 - MPMX26_02496 0.68 +0.6
2,584,253 - MPMX26_02496 0.68 -0.3
2,584,253 - MPMX26_02496 0.68 +0.8
2,584,253 - MPMX26_02496 0.68 -0.3
2,584,265 - MPMX26_02496 0.70 -0.5
2,584,385 - -0.6
2,584,385 - +0.6
2,584,395 - +0.9
2,584,480 - +0.1
2,584,481 - +0.5
2,584,481 - -0.2
2,584,493 - MPMX26_02497 0.18 +0.3
2,584,602 - +0.9
2,584,635 - -0.1
2,584,681 - MPMX26_02498 0.31 -1.6
2,584,681 - MPMX26_02498 0.31 -0.4
2,584,681 - MPMX26_02498 0.31 +0.0
2,584,779 - +0.8
2,584,779 - -0.1
2,584,781 - +0.1
2,584,781 - -0.1
2,584,781 - -0.7
2,584,781 - +0.0
2,584,781 - +0.4
2,584,781 - +0.5
2,584,800 - MPMX26_02499 0.30 -1.2
2,585,379 - +2.8
2,585,424 - -1.0
2,585,447 - -2.2
2,585,479 - MPMX26_02503 0.16 +0.6
2,585,494 - MPMX26_02503 0.19 -2.1
2,585,515 - MPMX26_02503 0.23 -0.7
2,585,525 - MPMX26_02503 0.25 -0.3
2,585,537 - MPMX26_02503 0.27 -1.4

Or see this region's nucleotide sequence