Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02488

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02486 and MPMX26_02487 are separated by 26 nucleotidesMPMX26_02487 and MPMX26_02488 are separated by 94 nucleotidesMPMX26_02488 and MPMX26_02489 are separated by 174 nucleotides MPMX26_02486: MPMX26_02486 - Formamidopyrimidine-DNA glycosylase, at 2,572,458 to 2,573,276 _02486 MPMX26_02487: MPMX26_02487 - Peptidyl-prolyl cis-trans isomerase C, at 2,573,303 to 2,573,587 _02487 MPMX26_02488: MPMX26_02488 - Large-conductance mechanosensitive channel, at 2,573,682 to 2,574,128 _02488 MPMX26_02489: MPMX26_02489 - GTP-binding protein TypA/BipA, at 2,574,303 to 2,576,138 _02489 Position (kb) 2573 2574 2575Strain fitness (log2 ratio) -1 0 1 2at 2572.694 kb on + strand, within MPMX26_02486at 2572.760 kb on + strand, within MPMX26_02486at 2572.765 kb on + strand, within MPMX26_02486at 2572.765 kb on + strand, within MPMX26_02486at 2572.765 kb on + strand, within MPMX26_02486at 2572.835 kb on + strand, within MPMX26_02486at 2572.835 kb on + strand, within MPMX26_02486at 2572.835 kb on + strand, within MPMX26_02486at 2572.869 kb on + strand, within MPMX26_02486at 2572.904 kb on + strand, within MPMX26_02486at 2572.968 kb on + strand, within MPMX26_02486at 2572.977 kb on + strand, within MPMX26_02486at 2573.023 kb on + strand, within MPMX26_02486at 2573.149 kb on + strand, within MPMX26_02486at 2573.151 kb on + strand, within MPMX26_02486at 2573.172 kb on + strand, within MPMX26_02486at 2573.215 kb on + strandat 2573.371 kb on + strand, within MPMX26_02487at 2573.372 kb on + strand, within MPMX26_02487at 2573.372 kb on + strand, within MPMX26_02487at 2573.372 kb on + strand, within MPMX26_02487at 2573.417 kb on + strand, within MPMX26_02487at 2573.419 kb on + strand, within MPMX26_02487at 2573.434 kb on + strand, within MPMX26_02487at 2573.434 kb on + strand, within MPMX26_02487at 2573.441 kb on + strand, within MPMX26_02487at 2573.441 kb on + strand, within MPMX26_02487at 2573.473 kb on + strand, within MPMX26_02487at 2573.500 kb on + strand, within MPMX26_02487at 2573.505 kb on + strand, within MPMX26_02487at 2573.514 kb on + strand, within MPMX26_02487at 2573.546 kb on + strand, within MPMX26_02487at 2573.687 kb on - strandat 2573.746 kb on - strand, within MPMX26_02488at 2573.769 kb on - strand, within MPMX26_02488at 2573.769 kb on - strand, within MPMX26_02488at 2573.805 kb on - strand, within MPMX26_02488at 2573.835 kb on - strand, within MPMX26_02488at 2573.835 kb on - strand, within MPMX26_02488at 2573.835 kb on - strand, within MPMX26_02488at 2573.884 kb on - strand, within MPMX26_02488at 2573.885 kb on - strand, within MPMX26_02488at 2573.885 kb on - strand, within MPMX26_02488at 2573.885 kb on - strand, within MPMX26_02488at 2573.894 kb on - strand, within MPMX26_02488at 2574.104 kb on - strandat 2574.384 kb on - strandat 2574.842 kb on - strand, within MPMX26_02489at 2574.852 kb on - strand, within MPMX26_02489at 2574.852 kb on - strand, within MPMX26_02489at 2574.974 kb on - strand, within MPMX26_02489at 2574.974 kb on - strand, within MPMX26_02489at 2574.974 kb on - strand, within MPMX26_02489at 2575.043 kb on - strand, within MPMX26_02489at 2575.070 kb on - strand, within MPMX26_02489at 2575.115 kb on - strand, within MPMX26_02489

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,572,694 + MPMX26_02486 0.29 +0.8
2,572,760 + MPMX26_02486 0.37 +0.0
2,572,765 + MPMX26_02486 0.37 +0.9
2,572,765 + MPMX26_02486 0.37 -0.1
2,572,765 + MPMX26_02486 0.37 -0.1
2,572,835 + MPMX26_02486 0.46 +0.5
2,572,835 + MPMX26_02486 0.46 +1.5
2,572,835 + MPMX26_02486 0.46 +0.5
2,572,869 + MPMX26_02486 0.50 -0.2
2,572,904 + MPMX26_02486 0.54 +0.2
2,572,968 + MPMX26_02486 0.62 +0.2
2,572,977 + MPMX26_02486 0.63 +0.4
2,573,023 + MPMX26_02486 0.69 -0.7
2,573,149 + MPMX26_02486 0.84 +2.5
2,573,151 + MPMX26_02486 0.85 +0.3
2,573,172 + MPMX26_02486 0.87 +0.6
2,573,215 + +0.5
2,573,371 + MPMX26_02487 0.24 +0.0
2,573,372 + MPMX26_02487 0.24 +0.5
2,573,372 + MPMX26_02487 0.24 -0.4
2,573,372 + MPMX26_02487 0.24 +0.8
2,573,417 + MPMX26_02487 0.40 -0.1
2,573,419 + MPMX26_02487 0.41 -0.6
2,573,434 + MPMX26_02487 0.46 +0.3
2,573,434 + MPMX26_02487 0.46 -1.2
2,573,441 + MPMX26_02487 0.48 -0.3
2,573,441 + MPMX26_02487 0.48 +0.9
2,573,473 + MPMX26_02487 0.60 -0.6
2,573,500 + MPMX26_02487 0.69 +0.1
2,573,505 + MPMX26_02487 0.71 +1.1
2,573,514 + MPMX26_02487 0.74 +0.2
2,573,546 + MPMX26_02487 0.85 -0.6
2,573,687 - -0.3
2,573,746 - MPMX26_02488 0.14 +0.5
2,573,769 - MPMX26_02488 0.19 -0.8
2,573,769 - MPMX26_02488 0.19 -0.8
2,573,805 - MPMX26_02488 0.28 +1.3
2,573,835 - MPMX26_02488 0.34 -0.7
2,573,835 - MPMX26_02488 0.34 -0.6
2,573,835 - MPMX26_02488 0.34 +0.5
2,573,884 - MPMX26_02488 0.45 -0.4
2,573,885 - MPMX26_02488 0.45 -0.1
2,573,885 - MPMX26_02488 0.45 -0.3
2,573,885 - MPMX26_02488 0.45 +0.3
2,573,894 - MPMX26_02488 0.47 -1.0
2,574,104 - +1.4
2,574,384 - +1.5
2,574,842 - MPMX26_02489 0.29 +0.5
2,574,852 - MPMX26_02489 0.30 +0.9
2,574,852 - MPMX26_02489 0.30 +0.2
2,574,974 - MPMX26_02489 0.37 +2.5
2,574,974 - MPMX26_02489 0.37 +0.9
2,574,974 - MPMX26_02489 0.37 +1.9
2,575,043 - MPMX26_02489 0.40 +0.5
2,575,070 - MPMX26_02489 0.42 +0.9
2,575,115 - MPMX26_02489 0.44 +2.5

Or see this region's nucleotide sequence