Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02201

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02199 and MPMX26_02200 overlap by 8 nucleotidesMPMX26_02200 and MPMX26_02201 overlap by 11 nucleotidesMPMX26_02201 and MPMX26_02202 are separated by 47 nucleotides MPMX26_02199: MPMX26_02199 - hypothetical protein, at 2,254,708 to 2,255,349 _02199 MPMX26_02200: MPMX26_02200 - hypothetical protein, at 2,255,342 to 2,255,662 _02200 MPMX26_02201: MPMX26_02201 - hypothetical protein, at 2,255,652 to 2,256,059 _02201 MPMX26_02202: MPMX26_02202 - hypothetical protein, at 2,256,107 to 2,258,512 _02202 Position (kb) 2255 2256 2257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2254.764 kb on + strandat 2254.789 kb on + strand, within MPMX26_02199at 2255.392 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.407 kb on + strand, within MPMX26_02200at 2255.420 kb on + strand, within MPMX26_02200at 2255.422 kb on + strand, within MPMX26_02200at 2255.434 kb on + strand, within MPMX26_02200at 2255.434 kb on + strand, within MPMX26_02200at 2255.442 kb on + strand, within MPMX26_02200at 2255.460 kb on + strand, within MPMX26_02200at 2255.462 kb on + strand, within MPMX26_02200at 2255.530 kb on + strand, within MPMX26_02200at 2255.530 kb on + strand, within MPMX26_02200at 2255.535 kb on + strand, within MPMX26_02200at 2255.536 kb on + strand, within MPMX26_02200at 2255.574 kb on + strand, within MPMX26_02200at 2255.574 kb on + strand, within MPMX26_02200at 2255.602 kb on + strand, within MPMX26_02200at 2255.626 kb on + strand, within MPMX26_02200at 2255.626 kb on + strand, within MPMX26_02200at 2255.633 kb on + strandat 2255.633 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.638 kb on + strandat 2255.646 kb on - strandat 2255.648 kb on + strandat 2255.707 kb on + strand, within MPMX26_02201at 2255.716 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.717 kb on + strand, within MPMX26_02201at 2255.807 kb on + strand, within MPMX26_02201at 2255.807 kb on + strand, within MPMX26_02201at 2255.807 kb on + strand, within MPMX26_02201at 2255.851 kb on + strand, within MPMX26_02201at 2255.859 kb on + strand, within MPMX26_02201at 2255.878 kb on + strand, within MPMX26_02201at 2255.878 kb on + strand, within MPMX26_02201at 2255.878 kb on + strand, within MPMX26_02201at 2255.878 kb on + strand, within MPMX26_02201at 2255.923 kb on + strand, within MPMX26_02201at 2255.941 kb on + strand, within MPMX26_02201at 2255.986 kb on + strand, within MPMX26_02201at 2255.986 kb on + strand, within MPMX26_02201at 2256.015 kb on + strand, within MPMX26_02201at 2256.015 kb on + strand, within MPMX26_02201at 2256.029 kb on + strandat 2256.037 kb on + strandat 2256.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,254,764 + +0.2
2,254,789 + MPMX26_02199 0.13 +1.6
2,255,392 + MPMX26_02200 0.16 -0.3
2,255,407 + MPMX26_02200 0.20 -0.4
2,255,407 + MPMX26_02200 0.20 -1.0
2,255,407 + MPMX26_02200 0.20 -0.0
2,255,407 + MPMX26_02200 0.20 -0.5
2,255,407 + MPMX26_02200 0.20 +1.6
2,255,407 + MPMX26_02200 0.20 -1.4
2,255,420 + MPMX26_02200 0.24 +0.4
2,255,422 + MPMX26_02200 0.25 +1.4
2,255,434 + MPMX26_02200 0.29 +0.4
2,255,434 + MPMX26_02200 0.29 +1.3
2,255,442 + MPMX26_02200 0.31 -0.7
2,255,460 + MPMX26_02200 0.37 +0.2
2,255,462 + MPMX26_02200 0.37 -0.3
2,255,530 + MPMX26_02200 0.59 +2.0
2,255,530 + MPMX26_02200 0.59 -0.3
2,255,535 + MPMX26_02200 0.60 +1.0
2,255,536 + MPMX26_02200 0.60 -0.2
2,255,574 + MPMX26_02200 0.72 -0.8
2,255,574 + MPMX26_02200 0.72 -0.3
2,255,602 + MPMX26_02200 0.81 -1.3
2,255,626 + MPMX26_02200 0.88 -0.3
2,255,626 + MPMX26_02200 0.88 +0.4
2,255,633 + -0.4
2,255,633 + +0.2
2,255,638 + +0.2
2,255,638 + +0.6
2,255,638 + +0.1
2,255,638 + +0.1
2,255,638 + +1.0
2,255,638 + +0.4
2,255,638 + +0.4
2,255,638 + +0.7
2,255,638 + +0.9
2,255,638 + +0.6
2,255,638 + +0.6
2,255,638 + -0.3
2,255,638 + +2.1
2,255,638 + -1.4
2,255,638 + -0.3
2,255,638 + +0.4
2,255,638 + +0.1
2,255,638 + -0.6
2,255,638 + +1.1
2,255,646 - +0.4
2,255,648 + -0.0
2,255,707 + MPMX26_02201 0.13 +0.1
2,255,716 + MPMX26_02201 0.16 -2.2
2,255,717 + MPMX26_02201 0.16 +0.4
2,255,717 + MPMX26_02201 0.16 +0.2
2,255,717 + MPMX26_02201 0.16 -0.6
2,255,717 + MPMX26_02201 0.16 -0.8
2,255,717 + MPMX26_02201 0.16 -0.2
2,255,717 + MPMX26_02201 0.16 -0.6
2,255,807 + MPMX26_02201 0.38 -0.3
2,255,807 + MPMX26_02201 0.38 -1.1
2,255,807 + MPMX26_02201 0.38 -0.8
2,255,851 + MPMX26_02201 0.49 -2.8
2,255,859 + MPMX26_02201 0.51 -1.0
2,255,878 + MPMX26_02201 0.55 -2.3
2,255,878 + MPMX26_02201 0.55 -1.0
2,255,878 + MPMX26_02201 0.55 -1.0
2,255,878 + MPMX26_02201 0.55 -0.8
2,255,923 + MPMX26_02201 0.66 -0.3
2,255,941 + MPMX26_02201 0.71 -1.7
2,255,986 + MPMX26_02201 0.82 -0.6
2,255,986 + MPMX26_02201 0.82 +0.1
2,256,015 + MPMX26_02201 0.89 -0.2
2,256,015 + MPMX26_02201 0.89 -0.8
2,256,029 + -0.1
2,256,037 + +0.2
2,256,044 + +0.2

Or see this region's nucleotide sequence