Experiment: no UV control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02010 and MPMX26_02011 are separated by 34 nucleotides MPMX26_02011 and MPMX26_02012 are separated by 45 nucleotides MPMX26_02012 and MPMX26_02013 are separated by 310 nucleotides
MPMX26_02010: MPMX26_02010 - hypothetical protein, at 2,076,009 to 2,076,215
_02010
MPMX26_02011: MPMX26_02011 - tRNA 5-hydroxyuridine methyltransferase, at 2,076,250 to 2,076,834
_02011
MPMX26_02012: MPMX26_02012 - hypothetical protein, at 2,076,880 to 2,077,095
_02012
MPMX26_02013: MPMX26_02013 - Alkyl hydroperoxide reductase subunit F, at 2,077,406 to 2,078,971
_02013
Position (kb)
2076
2077
2078 Strain fitness (log2 ratio)
-1
0
1
2 at 2076.271 kb on - strand at 2076.471 kb on + strand, within MPMX26_02011 at 2076.928 kb on - strand, within MPMX26_02012 at 2076.987 kb on - strand, within MPMX26_02012 at 2077.069 kb on - strand, within MPMX26_02012 at 2077.069 kb on - strand, within MPMX26_02012 at 2077.603 kb on + strand, within MPMX26_02013 at 2077.834 kb on + strand, within MPMX26_02013 at 2077.834 kb on + strand, within MPMX26_02013 at 2077.834 kb on + strand, within MPMX26_02013 at 2078.057 kb on + strand, within MPMX26_02013
Per-strain Table
Position Strand Gene LocusTag Fraction no UV control remove 2,076,271 - +0.0 2,076,471 + MPMX26_02011 0.38 -0.5 2,076,928 - MPMX26_02012 0.22 +0.0 2,076,987 - MPMX26_02012 0.50 +0.7 2,077,069 - MPMX26_02012 0.88 +0.4 2,077,069 - MPMX26_02012 0.88 +1.2 2,077,603 + MPMX26_02013 0.13 +2.5 2,077,834 + MPMX26_02013 0.27 +0.8 2,077,834 + MPMX26_02013 0.27 -0.6 2,077,834 + MPMX26_02013 0.27 +1.3 2,078,057 + MPMX26_02013 0.42 -0.5
Or see this region's nucleotide sequence