Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02012

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02010 and MPMX26_02011 are separated by 34 nucleotidesMPMX26_02011 and MPMX26_02012 are separated by 45 nucleotidesMPMX26_02012 and MPMX26_02013 are separated by 310 nucleotides MPMX26_02010: MPMX26_02010 - hypothetical protein, at 2,076,009 to 2,076,215 _02010 MPMX26_02011: MPMX26_02011 - tRNA 5-hydroxyuridine methyltransferase, at 2,076,250 to 2,076,834 _02011 MPMX26_02012: MPMX26_02012 - hypothetical protein, at 2,076,880 to 2,077,095 _02012 MPMX26_02013: MPMX26_02013 - Alkyl hydroperoxide reductase subunit F, at 2,077,406 to 2,078,971 _02013 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -1 0 1 2at 2076.271 kb on - strandat 2076.471 kb on + strand, within MPMX26_02011at 2076.928 kb on - strand, within MPMX26_02012at 2076.987 kb on - strand, within MPMX26_02012at 2077.069 kb on - strand, within MPMX26_02012at 2077.069 kb on - strand, within MPMX26_02012at 2077.603 kb on + strand, within MPMX26_02013at 2077.834 kb on + strand, within MPMX26_02013at 2077.834 kb on + strand, within MPMX26_02013at 2077.834 kb on + strand, within MPMX26_02013at 2078.057 kb on + strand, within MPMX26_02013

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,076,271 - +0.0
2,076,471 + MPMX26_02011 0.38 -0.5
2,076,928 - MPMX26_02012 0.22 +0.0
2,076,987 - MPMX26_02012 0.50 +0.7
2,077,069 - MPMX26_02012 0.88 +0.4
2,077,069 - MPMX26_02012 0.88 +1.2
2,077,603 + MPMX26_02013 0.13 +2.5
2,077,834 + MPMX26_02013 0.27 +0.8
2,077,834 + MPMX26_02013 0.27 -0.6
2,077,834 + MPMX26_02013 0.27 +1.3
2,078,057 + MPMX26_02013 0.42 -0.5

Or see this region's nucleotide sequence