Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02006

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02005 and MPMX26_02006 are separated by 249 nucleotidesMPMX26_02006 and MPMX26_02007 are separated by 94 nucleotides MPMX26_02005: MPMX26_02005 - hypothetical protein, at 2,066,845 to 2,068,092 _02005 MPMX26_02006: MPMX26_02006 - HTH-type transcriptional regulatory protein GabR, at 2,068,342 to 2,069,829 _02006 MPMX26_02007: MPMX26_02007 - Beta-ketodecanoyl-[acyl-carrier-protein] synthase, at 2,069,924 to 2,071,033 _02007 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1at 2068.045 kb on - strandat 2068.226 kb on - strandat 2069.801 kb on + strandat 2069.857 kb on + strandat 2069.898 kb on - strandat 2069.898 kb on - strandat 2069.898 kb on - strandat 2069.906 kb on - strandat 2069.952 kb on - strandat 2069.955 kb on - strandat 2069.964 kb on - strandat 2069.989 kb on - strandat 2070.029 kb on - strandat 2070.029 kb on - strandat 2070.034 kb on - strandat 2070.049 kb on - strand, within MPMX26_02007at 2070.098 kb on - strand, within MPMX26_02007at 2070.125 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.163 kb on - strand, within MPMX26_02007at 2070.168 kb on - strand, within MPMX26_02007at 2070.168 kb on - strand, within MPMX26_02007at 2070.198 kb on - strand, within MPMX26_02007at 2070.198 kb on - strand, within MPMX26_02007at 2070.259 kb on - strand, within MPMX26_02007at 2070.297 kb on - strand, within MPMX26_02007at 2070.369 kb on - strand, within MPMX26_02007at 2070.510 kb on - strand, within MPMX26_02007at 2070.520 kb on - strand, within MPMX26_02007at 2070.530 kb on - strand, within MPMX26_02007at 2070.530 kb on - strand, within MPMX26_02007at 2070.530 kb on - strand, within MPMX26_02007at 2070.567 kb on - strand, within MPMX26_02007at 2070.570 kb on - strand, within MPMX26_02007at 2070.570 kb on - strand, within MPMX26_02007at 2070.575 kb on - strand, within MPMX26_02007at 2070.604 kb on - strand, within MPMX26_02007at 2070.613 kb on - strand, within MPMX26_02007at 2070.613 kb on - strand, within MPMX26_02007at 2070.653 kb on - strand, within MPMX26_02007at 2070.663 kb on - strand, within MPMX26_02007at 2070.663 kb on - strand, within MPMX26_02007at 2070.663 kb on - strand, within MPMX26_02007at 2070.694 kb on - strand, within MPMX26_02007at 2070.694 kb on - strand, within MPMX26_02007at 2070.696 kb on - strand, within MPMX26_02007at 2070.749 kb on - strand, within MPMX26_02007

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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2,068,045 - -0.2
2,068,226 - -2.1
2,069,801 + -1.0
2,069,857 + +0.5
2,069,898 - -1.7
2,069,898 - +1.0
2,069,898 - -0.5
2,069,906 - -0.5
2,069,952 - +0.4
2,069,955 - -0.6
2,069,964 - -0.6
2,069,989 - -0.2
2,070,029 - -1.2
2,070,029 - -0.4
2,070,034 - -0.3
2,070,049 - MPMX26_02007 0.11 +0.1
2,070,098 - MPMX26_02007 0.16 +0.5
2,070,125 - MPMX26_02007 0.18 +0.3
2,070,163 - MPMX26_02007 0.22 -1.1
2,070,163 - MPMX26_02007 0.22 -0.5
2,070,163 - MPMX26_02007 0.22 +0.3
2,070,163 - MPMX26_02007 0.22 +0.3
2,070,163 - MPMX26_02007 0.22 -1.5
2,070,163 - MPMX26_02007 0.22 +0.4
2,070,163 - MPMX26_02007 0.22 -0.4
2,070,168 - MPMX26_02007 0.22 +0.5
2,070,168 - MPMX26_02007 0.22 -0.6
2,070,198 - MPMX26_02007 0.25 +0.3
2,070,198 - MPMX26_02007 0.25 -1.4
2,070,259 - MPMX26_02007 0.30 -1.1
2,070,297 - MPMX26_02007 0.34 +1.7
2,070,369 - MPMX26_02007 0.40 +0.7
2,070,510 - MPMX26_02007 0.53 +0.1
2,070,520 - MPMX26_02007 0.54 +0.9
2,070,530 - MPMX26_02007 0.55 -0.1
2,070,530 - MPMX26_02007 0.55 +0.3
2,070,530 - MPMX26_02007 0.55 +0.2
2,070,567 - MPMX26_02007 0.58 +1.1
2,070,570 - MPMX26_02007 0.58 +0.2
2,070,570 - MPMX26_02007 0.58 -0.2
2,070,575 - MPMX26_02007 0.59 +0.4
2,070,604 - MPMX26_02007 0.61 -0.4
2,070,613 - MPMX26_02007 0.62 -0.8
2,070,613 - MPMX26_02007 0.62 +0.2
2,070,653 - MPMX26_02007 0.66 -0.4
2,070,663 - MPMX26_02007 0.67 -0.6
2,070,663 - MPMX26_02007 0.67 +1.3
2,070,663 - MPMX26_02007 0.67 +0.5
2,070,694 - MPMX26_02007 0.69 -0.7
2,070,694 - MPMX26_02007 0.69 +0.4
2,070,696 - MPMX26_02007 0.70 +0.6
2,070,749 - MPMX26_02007 0.74 -0.0

Or see this region's nucleotide sequence