Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01714

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01713 and MPMX26_01714 are separated by 114 nucleotidesMPMX26_01714 and MPMX26_01715 are separated by 240 nucleotidesMPMX26_01715 and MPMX26_01716 are separated by 93 nucleotides MPMX26_01713: MPMX26_01713 - Metal-pseudopaline receptor CntO, at 1,768,597 to 1,770,723 _01713 MPMX26_01714: MPMX26_01714 - tRNA/tmRNA (uracil-C(5))-methyltransferase, at 1,770,838 to 1,771,923 _01714 MPMX26_01715: MPMX26_01715 - hypothetical protein, at 1,772,164 to 1,772,391 _01715 MPMX26_01716: MPMX26_01716 - 2-(hydroxymethyl)glutarate dehydrogenase, at 1,772,485 to 1,773,366 _01716 Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1769.850 kb on + strand, within MPMX26_01713at 1769.857 kb on + strand, within MPMX26_01713at 1769.862 kb on + strand, within MPMX26_01713at 1769.919 kb on + strand, within MPMX26_01713at 1769.919 kb on + strand, within MPMX26_01713at 1770.028 kb on + strand, within MPMX26_01713at 1770.058 kb on + strand, within MPMX26_01713at 1770.058 kb on + strand, within MPMX26_01713at 1770.060 kb on + strand, within MPMX26_01713at 1770.204 kb on + strand, within MPMX26_01713at 1770.204 kb on + strand, within MPMX26_01713at 1770.333 kb on + strand, within MPMX26_01713at 1770.460 kb on + strand, within MPMX26_01713at 1770.460 kb on + strand, within MPMX26_01713at 1770.462 kb on + strand, within MPMX26_01713at 1770.522 kb on + strandat 1770.522 kb on + strandat 1770.522 kb on + strandat 1770.597 kb on + strandat 1770.600 kb on + strandat 1770.618 kb on + strandat 1770.619 kb on + strandat 1770.855 kb on + strandat 1770.902 kb on + strandat 1770.937 kb on + strandat 1770.996 kb on + strand, within MPMX26_01714at 1771.021 kb on + strand, within MPMX26_01714at 1771.021 kb on + strand, within MPMX26_01714at 1771.072 kb on + strand, within MPMX26_01714at 1771.074 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.113 kb on + strand, within MPMX26_01714at 1771.168 kb on + strand, within MPMX26_01714at 1771.289 kb on + strand, within MPMX26_01714at 1771.299 kb on + strand, within MPMX26_01714at 1771.300 kb on + strand, within MPMX26_01714at 1771.365 kb on + strand, within MPMX26_01714at 1771.386 kb on + strand, within MPMX26_01714at 1771.425 kb on + strand, within MPMX26_01714at 1771.566 kb on - strand, within MPMX26_01714at 1771.608 kb on + strand, within MPMX26_01714at 1771.608 kb on + strand, within MPMX26_01714at 1771.615 kb on + strand, within MPMX26_01714at 1771.615 kb on + strand, within MPMX26_01714at 1771.615 kb on + strand, within MPMX26_01714at 1771.627 kb on + strand, within MPMX26_01714at 1771.717 kb on + strand, within MPMX26_01714at 1771.791 kb on + strand, within MPMX26_01714at 1771.795 kb on + strand, within MPMX26_01714at 1771.798 kb on + strand, within MPMX26_01714at 1771.896 kb on + strandat 1772.179 kb on + strandat 1772.184 kb on + strandat 1772.184 kb on + strandat 1772.189 kb on + strand, within MPMX26_01715at 1772.212 kb on + strand, within MPMX26_01715at 1772.315 kb on + strand, within MPMX26_01715at 1772.326 kb on + strand, within MPMX26_01715

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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1,769,850 + MPMX26_01713 0.59 +0.0
1,769,857 + MPMX26_01713 0.59 +0.2
1,769,862 + MPMX26_01713 0.59 +2.5
1,769,919 + MPMX26_01713 0.62 -0.5
1,769,919 + MPMX26_01713 0.62 +0.0
1,770,028 + MPMX26_01713 0.67 +0.1
1,770,058 + MPMX26_01713 0.69 -1.4
1,770,058 + MPMX26_01713 0.69 -0.6
1,770,060 + MPMX26_01713 0.69 +0.6
1,770,204 + MPMX26_01713 0.76 -0.4
1,770,204 + MPMX26_01713 0.76 -0.1
1,770,333 + MPMX26_01713 0.82 +0.1
1,770,460 + MPMX26_01713 0.88 +0.7
1,770,460 + MPMX26_01713 0.88 +0.1
1,770,462 + MPMX26_01713 0.88 +1.2
1,770,522 + -0.4
1,770,522 + -1.2
1,770,522 + -1.1
1,770,597 + -0.8
1,770,600 + +0.3
1,770,618 + -0.2
1,770,619 + +0.5
1,770,855 + -0.6
1,770,902 + +0.5
1,770,937 + -0.2
1,770,996 + MPMX26_01714 0.15 +1.2
1,771,021 + MPMX26_01714 0.17 +0.3
1,771,021 + MPMX26_01714 0.17 -0.6
1,771,072 + MPMX26_01714 0.22 -0.3
1,771,074 + MPMX26_01714 0.22 +0.3
1,771,113 + MPMX26_01714 0.25 +0.6
1,771,113 + MPMX26_01714 0.25 -0.6
1,771,113 + MPMX26_01714 0.25 +0.0
1,771,113 + MPMX26_01714 0.25 -0.1
1,771,113 + MPMX26_01714 0.25 -0.5
1,771,113 + MPMX26_01714 0.25 +0.0
1,771,113 + MPMX26_01714 0.25 -0.6
1,771,113 + MPMX26_01714 0.25 -0.3
1,771,168 + MPMX26_01714 0.30 -0.5
1,771,289 + MPMX26_01714 0.42 +3.1
1,771,299 + MPMX26_01714 0.42 -1.8
1,771,300 + MPMX26_01714 0.43 +0.3
1,771,365 + MPMX26_01714 0.49 -0.2
1,771,386 + MPMX26_01714 0.50 -1.1
1,771,425 + MPMX26_01714 0.54 +0.3
1,771,566 - MPMX26_01714 0.67 +0.9
1,771,608 + MPMX26_01714 0.71 -0.8
1,771,608 + MPMX26_01714 0.71 -0.9
1,771,615 + MPMX26_01714 0.72 +0.3
1,771,615 + MPMX26_01714 0.72 +0.5
1,771,615 + MPMX26_01714 0.72 -0.5
1,771,627 + MPMX26_01714 0.73 -0.1
1,771,717 + MPMX26_01714 0.81 -0.4
1,771,791 + MPMX26_01714 0.88 -0.3
1,771,795 + MPMX26_01714 0.88 +0.3
1,771,798 + MPMX26_01714 0.88 +0.4
1,771,896 + -0.2
1,772,179 + -0.1
1,772,184 + -0.7
1,772,184 + -1.1
1,772,189 + MPMX26_01715 0.11 +1.1
1,772,212 + MPMX26_01715 0.21 +0.3
1,772,315 + MPMX26_01715 0.66 -0.3
1,772,326 + MPMX26_01715 0.71 -0.3

Or see this region's nucleotide sequence