Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01158

Experiment: no UV control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01155 and MPMX26_01156 are separated by 8 nucleotidesMPMX26_01156 and MPMX26_01157 are separated by 11 nucleotidesMPMX26_01157 and MPMX26_01158 are separated by 210 nucleotidesMPMX26_01158 and MPMX26_01159 are separated by 10 nucleotidesMPMX26_01159 and MPMX26_01160 overlap by 1 nucleotidesMPMX26_01160 and MPMX26_01161 are separated by 4 nucleotides MPMX26_01155: MPMX26_01155 - 50S ribosomal protein L9, at 1,223,406 to 1,223,852 _01155 MPMX26_01156: MPMX26_01156 - 30S ribosomal protein S18, at 1,223,861 to 1,224,088 _01156 MPMX26_01157: MPMX26_01157 - 30S ribosomal protein S6, at 1,224,100 to 1,224,486 _01157 MPMX26_01158: MPMX26_01158 - Protoheme IX farnesyltransferase, at 1,224,697 to 1,225,575 _01158 MPMX26_01159: MPMX26_01159 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,225,586 to 1,225,912 _01159 MPMX26_01160: MPMX26_01160 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,225,912 to 1,226,532 _01160 MPMX26_01161: MPMX26_01161 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,226,537 to 1,228,519 _01161 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1223.777 kb on - strand, within MPMX26_01155at 1223.783 kb on - strand, within MPMX26_01155at 1224.727 kb on - strandat 1224.766 kb on - strandat 1224.797 kb on + strand, within MPMX26_01158at 1224.797 kb on + strand, within MPMX26_01158at 1224.805 kb on - strand, within MPMX26_01158at 1224.805 kb on - strand, within MPMX26_01158at 1224.815 kb on - strand, within MPMX26_01158at 1224.837 kb on - strand, within MPMX26_01158at 1224.837 kb on - strand, within MPMX26_01158at 1224.864 kb on + strand, within MPMX26_01158at 1224.872 kb on - strand, within MPMX26_01158at 1224.885 kb on + strand, within MPMX26_01158at 1224.900 kb on - strand, within MPMX26_01158at 1224.928 kb on + strand, within MPMX26_01158at 1224.929 kb on - strand, within MPMX26_01158at 1224.939 kb on - strand, within MPMX26_01158at 1224.949 kb on - strand, within MPMX26_01158at 1224.967 kb on - strand, within MPMX26_01158at 1224.980 kb on - strand, within MPMX26_01158at 1225.077 kb on - strand, within MPMX26_01158at 1225.092 kb on - strand, within MPMX26_01158at 1225.092 kb on - strand, within MPMX26_01158at 1225.119 kb on + strand, within MPMX26_01158at 1225.207 kb on + strand, within MPMX26_01158at 1225.207 kb on + strand, within MPMX26_01158at 1225.215 kb on - strand, within MPMX26_01158at 1225.261 kb on - strand, within MPMX26_01158at 1225.261 kb on - strand, within MPMX26_01158at 1225.584 kb on + strandat 1225.584 kb on + strandat 1225.584 kb on + strandat 1225.592 kb on - strandat 1225.592 kb on - strandat 1225.652 kb on + strand, within MPMX26_01159at 1225.657 kb on + strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.701 kb on - strand, within MPMX26_01159at 1225.701 kb on - strand, within MPMX26_01159at 1225.734 kb on + strand, within MPMX26_01159at 1225.800 kb on + strand, within MPMX26_01159at 1225.831 kb on + strand, within MPMX26_01159at 1225.843 kb on + strand, within MPMX26_01159at 1225.843 kb on + strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.918 kb on - strandat 1225.959 kb on - strandat 1225.959 kb on - strandat 1225.961 kb on + strandat 1226.093 kb on + strand, within MPMX26_01160at 1226.093 kb on + strand, within MPMX26_01160at 1226.093 kb on + strand, within MPMX26_01160at 1226.101 kb on - strand, within MPMX26_01160at 1226.101 kb on - strand, within MPMX26_01160at 1226.111 kb on - strand, within MPMX26_01160at 1226.194 kb on - strand, within MPMX26_01160at 1226.293 kb on + strand, within MPMX26_01160at 1226.349 kb on + strand, within MPMX26_01160at 1226.381 kb on + strand, within MPMX26_01160at 1226.383 kb on + strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.536 kb on - strandat 1226.536 kb on - strandat 1226.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
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1,223,777 - MPMX26_01155 0.83 -0.0
1,223,783 - MPMX26_01155 0.84 -0.6
1,224,727 - -3.0
1,224,766 - -1.3
1,224,797 + MPMX26_01158 0.11 -1.5
1,224,797 + MPMX26_01158 0.11 +0.5
1,224,805 - MPMX26_01158 0.12 -1.6
1,224,805 - MPMX26_01158 0.12 -0.0
1,224,815 - MPMX26_01158 0.13 +0.2
1,224,837 - MPMX26_01158 0.16 -0.6
1,224,837 - MPMX26_01158 0.16 -0.6
1,224,864 + MPMX26_01158 0.19 +1.0
1,224,872 - MPMX26_01158 0.20 -0.8
1,224,885 + MPMX26_01158 0.21 -0.6
1,224,900 - MPMX26_01158 0.23 +0.5
1,224,928 + MPMX26_01158 0.26 +0.2
1,224,929 - MPMX26_01158 0.26 +0.2
1,224,939 - MPMX26_01158 0.28 +1.0
1,224,949 - MPMX26_01158 0.29 -0.0
1,224,967 - MPMX26_01158 0.31 +1.5
1,224,980 - MPMX26_01158 0.32 +0.5
1,225,077 - MPMX26_01158 0.43 +0.2
1,225,092 - MPMX26_01158 0.45 -0.3
1,225,092 - MPMX26_01158 0.45 +1.5
1,225,119 + MPMX26_01158 0.48 -0.5
1,225,207 + MPMX26_01158 0.58 +0.2
1,225,207 + MPMX26_01158 0.58 +1.0
1,225,215 - MPMX26_01158 0.59 -0.3
1,225,261 - MPMX26_01158 0.64 -0.8
1,225,261 - MPMX26_01158 0.64 +1.5
1,225,584 + -0.3
1,225,584 + -1.4
1,225,584 + +3.1
1,225,592 - +0.5
1,225,592 - -1.4
1,225,652 + MPMX26_01159 0.20 -0.0
1,225,657 + MPMX26_01159 0.22 +0.5
1,225,660 - MPMX26_01159 0.23 -0.5
1,225,660 - MPMX26_01159 0.23 -0.5
1,225,660 - MPMX26_01159 0.23 +0.2
1,225,660 - MPMX26_01159 0.23 -0.9
1,225,701 - MPMX26_01159 0.35 +0.2
1,225,701 - MPMX26_01159 0.35 -0.5
1,225,734 + MPMX26_01159 0.45 -0.5
1,225,800 + MPMX26_01159 0.65 +1.0
1,225,831 + MPMX26_01159 0.75 +0.5
1,225,843 + MPMX26_01159 0.79 +1.0
1,225,843 + MPMX26_01159 0.79 +1.0
1,225,851 - MPMX26_01159 0.81 -0.8
1,225,851 - MPMX26_01159 0.81 -0.9
1,225,851 - MPMX26_01159 0.81 -2.3
1,225,851 - MPMX26_01159 0.81 +1.5
1,225,918 - +0.5
1,225,959 - +0.5
1,225,959 - +0.5
1,225,961 + +0.5
1,226,093 + MPMX26_01160 0.29 +0.5
1,226,093 + MPMX26_01160 0.29 +1.0
1,226,093 + MPMX26_01160 0.29 +0.5
1,226,101 - MPMX26_01160 0.30 -0.0
1,226,101 - MPMX26_01160 0.30 +0.5
1,226,111 - MPMX26_01160 0.32 -0.3
1,226,194 - MPMX26_01160 0.45 +1.2
1,226,293 + MPMX26_01160 0.61 +1.5
1,226,349 + MPMX26_01160 0.70 -0.3
1,226,381 + MPMX26_01160 0.76 -0.0
1,226,383 + MPMX26_01160 0.76 +1.5
1,226,391 - MPMX26_01160 0.77 -0.0
1,226,391 - MPMX26_01160 0.77 -0.8
1,226,391 - MPMX26_01160 0.77 -0.3
1,226,391 - MPMX26_01160 0.77 +1.0
1,226,536 - -0.0
1,226,536 - -0.6
1,226,543 - +0.5

Or see this region's nucleotide sequence