Experiment: no UV control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00890 and MPMX26_00891 are separated by 416 nucleotides MPMX26_00891 and MPMX26_00892 are separated by 279 nucleotides MPMX26_00892 and MPMX26_00893 are separated by 0 nucleotides
MPMX26_00890: MPMX26_00890 - hypothetical protein, at 935,764 to 936,402
_00890
MPMX26_00891: MPMX26_00891 - hypothetical protein, at 936,819 to 937,250
_00891
MPMX26_00892: MPMX26_00892 - IS3 family transposase ISAcsp5, at 937,530 to 937,736
_00892
MPMX26_00893: MPMX26_00893 - IS3 family transposase ISAcsp5, at 937,737 to 938,168
_00893
Position (kb) 936
937
938 Strain fitness (log2 ratio) -1
0
1 at 936.228 kb on + strand, within MPMX26_00890 at 936.331 kb on + strand, within MPMX26_00890 at 936.796 kb on - strand at 936.835 kb on - strand at 936.835 kb on - strand at 936.844 kb on - strand at 936.851 kb on - strand at 936.851 kb on - strand at 936.913 kb on - strand, within MPMX26_00891 at 936.913 kb on - strand, within MPMX26_00891 at 937.104 kb on - strand, within MPMX26_00891 at 937.191 kb on - strand, within MPMX26_00891 at 937.191 kb on - strand, within MPMX26_00891 at 937.191 kb on - strand, within MPMX26_00891 at 937.192 kb on - strand, within MPMX26_00891 at 937.193 kb on - strand, within MPMX26_00891 at 937.193 kb on - strand, within MPMX26_00891
Per-strain Table
Position Strand Gene LocusTag Fraction no UV control remove 936,228 + MPMX26_00890 0.73 +1.3 936,331 + MPMX26_00890 0.89 -0.8 936,796 - +0.2 936,835 - -0.6 936,835 - +0.2 936,844 - -0.2 936,851 - -0.3 936,851 - -0.7 936,913 - MPMX26_00891 0.22 +0.4 936,913 - MPMX26_00891 0.22 -0.3 937,104 - MPMX26_00891 0.66 -1.2 937,191 - MPMX26_00891 0.86 +0.3 937,191 - MPMX26_00891 0.86 -0.1 937,191 - MPMX26_00891 0.86 -0.1 937,192 - MPMX26_00891 0.86 -1.1 937,193 - MPMX26_00891 0.87 +0.3 937,193 - MPMX26_00891 0.87 -0.3
Or see this region's nucleotide sequence