Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00991

Experiment: no UV control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00990 and MPMX26_00991 are separated by 53 nucleotidesMPMX26_00991 and MPMX26_00992 are separated by 37 nucleotidesMPMX26_00992 and MPMX26_00993 are separated by 57 nucleotidesMPMX26_00993 and MPMX26_00994 are separated by 201 nucleotides MPMX26_00990: MPMX26_00990 - hypothetical protein, at 1,042,690 to 1,043,997 _00990 MPMX26_00991: MPMX26_00991 - hypothetical protein, at 1,044,051 to 1,044,299 _00991 MPMX26_00992: MPMX26_00992 - hypothetical protein, at 1,044,337 to 1,044,780 _00992 MPMX26_00993: MPMX26_00993 - tRNA-Asn, at 1,044,838 to 1,044,913 _00993 MPMX26_00994: MPMX26_00994 - tRNA-Asn, at 1,045,115 to 1,045,190 _00994 Position (kb) 1044 1045Strain fitness (log2 ratio) -1 0 1at 1043.184 kb on + strand, within MPMX26_00990at 1043.844 kb on + strand, within MPMX26_00990at 1044.168 kb on + strand, within MPMX26_00991at 1044.182 kb on + strand, within MPMX26_00991at 1044.182 kb on + strand, within MPMX26_00991

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no UV control
remove
1,043,184 + MPMX26_00990 0.38 +0.2
1,043,844 + MPMX26_00990 0.88 +1.0
1,044,168 + MPMX26_00991 0.47 -0.4
1,044,182 + MPMX26_00991 0.53 -0.5
1,044,182 + MPMX26_00991 0.53 +0.3

Or see this region's nucleotide sequence