Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03176

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03175 and MPMX26_03176 are separated by 748 nucleotidesMPMX26_03176 and MPMX26_03177 are separated by 98 nucleotidesMPMX26_03177 and MPMX26_03178 are separated by 185 nucleotidesMPMX26_03178 and MPMX26_03179 overlap by 4 nucleotides MPMX26_03175: MPMX26_03175 - Phosphoethanolamine transferase EptA, at 30,742 to 32,418 _03175 MPMX26_03176: MPMX26_03176 - IS6 family transposase IS1006, at 33,167 to 33,871 _03176 MPMX26_03177: MPMX26_03177 - hypothetical protein, at 33,970 to 34,341 _03177 MPMX26_03178: MPMX26_03178 - hypothetical protein, at 34,527 to 34,859 _03178 MPMX26_03179: MPMX26_03179 - hypothetical protein, at 34,856 to 35,104 _03179 Position (kb) 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 32.175 kb on - strand, within MPMX26_03175at 32.226 kb on - strand, within MPMX26_03175at 32.241 kb on - strand, within MPMX26_03175at 32.251 kb on - strandat 32.272 kb on - strandat 32.272 kb on - strandat 32.272 kb on - strandat 32.290 kb on - strandat 32.369 kb on - strandat 32.369 kb on - strandat 32.369 kb on - strandat 32.393 kb on - strandat 32.605 kb on - strandat 32.621 kb on - strandat 32.631 kb on - strandat 32.708 kb on + strandat 32.717 kb on + strandat 32.721 kb on + strandat 32.804 kb on - strandat 32.818 kb on + strandat 32.819 kb on - strandat 32.897 kb on + strandat 32.900 kb on - strandat 32.910 kb on - strandat 33.068 kb on + strandat 33.069 kb on - strandat 33.087 kb on + strandat 33.087 kb on + strandat 33.101 kb on + strandat 33.101 kb on + strandat 33.109 kb on - strandat 33.143 kb on - strandat 33.143 kb on - strandat 33.143 kb on - strandat 33.239 kb on + strand, within MPMX26_03176at 33.290 kb on - strand, within MPMX26_03176at 33.293 kb on + strand, within MPMX26_03176at 33.302 kb on + strand, within MPMX26_03176at 33.302 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.317 kb on + strand, within MPMX26_03176at 33.325 kb on - strand, within MPMX26_03176at 33.325 kb on - strand, within MPMX26_03176at 33.325 kb on - strand, within MPMX26_03176at 33.355 kb on - strand, within MPMX26_03176at 33.369 kb on + strand, within MPMX26_03176at 33.369 kb on + strand, within MPMX26_03176at 33.369 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.377 kb on + strand, within MPMX26_03176at 33.379 kb on + strand, within MPMX26_03176at 33.387 kb on + strand, within MPMX26_03176at 33.439 kb on + strand, within MPMX26_03176at 33.439 kb on + strand, within MPMX26_03176at 33.566 kb on + strand, within MPMX26_03176at 33.568 kb on + strand, within MPMX26_03176at 33.584 kb on + strand, within MPMX26_03176at 33.589 kb on + strand, within MPMX26_03176at 33.642 kb on + strand, within MPMX26_03176at 33.658 kb on + strand, within MPMX26_03176at 33.669 kb on + strand, within MPMX26_03176at 33.702 kb on - strand, within MPMX26_03176at 33.706 kb on - strand, within MPMX26_03176at 33.712 kb on + strand, within MPMX26_03176at 33.768 kb on + strand, within MPMX26_03176at 33.776 kb on + strand, within MPMX26_03176at 33.780 kb on + strand, within MPMX26_03176at 33.780 kb on + strand, within MPMX26_03176at 33.780 kb on + strand, within MPMX26_03176at 33.780 kb on + strand, within MPMX26_03176at 33.790 kb on + strand, within MPMX26_03176at 33.790 kb on + strand, within MPMX26_03176at 33.790 kb on + strand, within MPMX26_03176at 33.790 kb on + strand, within MPMX26_03176at 33.790 kb on + strand, within MPMX26_03176at 33.797 kb on + strand, within MPMX26_03176at 33.802 kb on + strandat 33.834 kb on - strandat 33.956 kb on - strandat 33.956 kb on - strandat 34.005 kb on - strandat 34.074 kb on - strand, within MPMX26_03177at 34.083 kb on - strand, within MPMX26_03177at 34.083 kb on - strand, within MPMX26_03177at 34.083 kb on - strand, within MPMX26_03177at 34.083 kb on - strand, within MPMX26_03177at 34.164 kb on - strand, within MPMX26_03177at 34.183 kb on - strand, within MPMX26_03177at 34.225 kb on - strand, within MPMX26_03177at 34.261 kb on - strand, within MPMX26_03177at 34.261 kb on - strand, within MPMX26_03177at 34.435 kb on + strandat 34.622 kb on - strand, within MPMX26_03178at 34.622 kb on - strand, within MPMX26_03178at 34.622 kb on - strand, within MPMX26_03178at 34.645 kb on - strand, within MPMX26_03178at 34.645 kb on - strand, within MPMX26_03178at 34.645 kb on - strand, within MPMX26_03178at 34.669 kb on - strand, within MPMX26_03178at 34.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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32,175 - MPMX26_03175 0.85 -0.8
32,226 - MPMX26_03175 0.88 +0.6
32,241 - MPMX26_03175 0.89 +1.4
32,251 - -0.9
32,272 - +0.2
32,272 - +1.6
32,272 - +0.9
32,290 - +1.4
32,369 - +0.5
32,369 - -0.1
32,369 - +1.0
32,393 - -0.7
32,605 - +0.6
32,621 - +1.1
32,631 - +2.6
32,708 + -0.2
32,717 + +1.6
32,721 + +0.8
32,804 - +0.3
32,818 + +0.8
32,819 - +0.5
32,897 + +0.2
32,900 - -0.4
32,910 - +0.3
33,068 + +1.8
33,069 - +1.2
33,087 + -0.2
33,087 + +0.1
33,101 + -0.8
33,101 + -0.6
33,109 - +1.3
33,143 - -0.4
33,143 - +1.0
33,143 - +1.3
33,239 + MPMX26_03176 0.10 +1.6
33,290 - MPMX26_03176 0.17 +1.4
33,293 + MPMX26_03176 0.18 +0.4
33,302 + MPMX26_03176 0.19 +0.4
33,302 + MPMX26_03176 0.19 +0.3
33,317 + MPMX26_03176 0.21 -0.2
33,317 + MPMX26_03176 0.21 +0.8
33,317 + MPMX26_03176 0.21 +0.8
33,317 + MPMX26_03176 0.21 +1.0
33,317 + MPMX26_03176 0.21 -0.2
33,317 + MPMX26_03176 0.21 +0.1
33,317 + MPMX26_03176 0.21 +0.0
33,317 + MPMX26_03176 0.21 +0.4
33,317 + MPMX26_03176 0.21 -0.4
33,317 + MPMX26_03176 0.21 +0.4
33,317 + MPMX26_03176 0.21 +1.3
33,325 - MPMX26_03176 0.22 +0.4
33,325 - MPMX26_03176 0.22 +0.4
33,325 - MPMX26_03176 0.22 +1.6
33,355 - MPMX26_03176 0.27 +0.9
33,369 + MPMX26_03176 0.29 -0.9
33,369 + MPMX26_03176 0.29 +0.2
33,369 + MPMX26_03176 0.29 -1.5
33,377 + MPMX26_03176 0.30 +2.2
33,377 + MPMX26_03176 0.30 -0.4
33,377 + MPMX26_03176 0.30 +0.2
33,377 + MPMX26_03176 0.30 -1.9
33,377 + MPMX26_03176 0.30 +1.8
33,377 + MPMX26_03176 0.30 +0.2
33,377 + MPMX26_03176 0.30 -0.7
33,379 + MPMX26_03176 0.30 -1.3
33,387 + MPMX26_03176 0.31 -0.1
33,439 + MPMX26_03176 0.39 +0.0
33,439 + MPMX26_03176 0.39 +0.3
33,566 + MPMX26_03176 0.57 +0.2
33,568 + MPMX26_03176 0.57 +0.1
33,584 + MPMX26_03176 0.59 -0.2
33,589 + MPMX26_03176 0.60 +0.9
33,642 + MPMX26_03176 0.67 -0.3
33,658 + MPMX26_03176 0.70 +0.7
33,669 + MPMX26_03176 0.71 +2.0
33,702 - MPMX26_03176 0.76 +1.0
33,706 - MPMX26_03176 0.76 -1.0
33,712 + MPMX26_03176 0.77 +1.4
33,768 + MPMX26_03176 0.85 +0.2
33,776 + MPMX26_03176 0.86 -1.0
33,780 + MPMX26_03176 0.87 +0.9
33,780 + MPMX26_03176 0.87 +1.5
33,780 + MPMX26_03176 0.87 -0.1
33,780 + MPMX26_03176 0.87 -0.5
33,790 + MPMX26_03176 0.88 +0.5
33,790 + MPMX26_03176 0.88 +0.1
33,790 + MPMX26_03176 0.88 -0.6
33,790 + MPMX26_03176 0.88 +0.7
33,790 + MPMX26_03176 0.88 -1.0
33,797 + MPMX26_03176 0.89 +0.5
33,802 + -0.0
33,834 - +0.0
33,956 - +1.8
33,956 - -1.5
34,005 - +1.0
34,074 - MPMX26_03177 0.28 +0.0
34,083 - MPMX26_03177 0.30 -1.2
34,083 - MPMX26_03177 0.30 -1.7
34,083 - MPMX26_03177 0.30 +0.4
34,083 - MPMX26_03177 0.30 +2.0
34,164 - MPMX26_03177 0.52 +0.9
34,183 - MPMX26_03177 0.57 +0.2
34,225 - MPMX26_03177 0.69 +0.2
34,261 - MPMX26_03177 0.78 +0.6
34,261 - MPMX26_03177 0.78 +1.0
34,435 + -0.5
34,622 - MPMX26_03178 0.29 -0.4
34,622 - MPMX26_03178 0.29 -0.4
34,622 - MPMX26_03178 0.29 +0.1
34,645 - MPMX26_03178 0.35 -1.3
34,645 - MPMX26_03178 0.35 +0.2
34,645 - MPMX26_03178 0.35 +0.8
34,669 - MPMX26_03178 0.43 -1.0
34,871 - -1.2

Or see this region's nucleotide sequence