Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03171

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03170 and MPMX26_03171 are separated by 263 nucleotidesMPMX26_03171 and MPMX26_03172 are separated by 39 nucleotidesMPMX26_03172 and MPMX26_03173 are separated by 27 nucleotides MPMX26_03170: MPMX26_03170 - IS6 family transposase IS1006, at 26,618 to 27,322 _03170 MPMX26_03171: MPMX26_03171 - Diacylglycerol kinase, at 27,586 to 27,972 _03171 MPMX26_03172: MPMX26_03172 - hypothetical protein, at 28,012 to 28,722 _03172 MPMX26_03173: MPMX26_03173 - Sensor protein QseC, at 28,750 to 30,063 _03173 Position (kb) 27 28Strain fitness (log2 ratio) -1 0 1 2 3at 26.604 kb on - strandat 26.609 kb on - strandat 26.766 kb on + strand, within MPMX26_03170at 26.768 kb on + strand, within MPMX26_03170at 26.776 kb on - strand, within MPMX26_03170at 26.781 kb on - strand, within MPMX26_03170at 26.822 kb on - strand, within MPMX26_03170at 27.360 kb on + strandat 27.816 kb on + strand, within MPMX26_03171at 27.816 kb on + strand, within MPMX26_03171at 27.863 kb on + strand, within MPMX26_03171at 27.888 kb on + strand, within MPMX26_03171at 27.889 kb on + strand, within MPMX26_03171at 27.889 kb on + strand, within MPMX26_03171at 27.889 kb on + strand, within MPMX26_03171at 27.889 kb on + strand, within MPMX26_03171at 27.889 kb on + strand, within MPMX26_03171at 27.894 kb on + strand, within MPMX26_03171at 27.897 kb on - strand, within MPMX26_03171at 27.931 kb on + strand, within MPMX26_03171at 27.937 kb on + strandat 27.939 kb on - strandat 27.939 kb on - strandat 28.095 kb on + strand, within MPMX26_03172at 28.105 kb on + strand, within MPMX26_03172at 28.187 kb on - strand, within MPMX26_03172at 28.222 kb on + strand, within MPMX26_03172at 28.224 kb on + strand, within MPMX26_03172at 28.224 kb on + strand, within MPMX26_03172at 28.232 kb on + strand, within MPMX26_03172at 28.321 kb on - strand, within MPMX26_03172at 28.333 kb on - strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.360 kb on + strand, within MPMX26_03172at 28.426 kb on + strand, within MPMX26_03172at 28.445 kb on - strand, within MPMX26_03172at 28.566 kb on - strand, within MPMX26_03172at 28.622 kb on + strand, within MPMX26_03172at 28.667 kb on - strandat 28.699 kb on - strandat 28.699 kb on - strandat 28.777 kb on - strandat 28.777 kb on - strandat 28.779 kb on - strandat 28.797 kb on + strandat 28.805 kb on - strandat 28.826 kb on + strandat 28.866 kb on - strandat 28.866 kb on - strandat 28.911 kb on - strand, within MPMX26_03173at 28.921 kb on - strand, within MPMX26_03173at 28.932 kb on + strand, within MPMX26_03173at 28.945 kb on - strand, within MPMX26_03173at 28.945 kb on - strand, within MPMX26_03173at 28.945 kb on - strand, within MPMX26_03173at 28.945 kb on - strand, within MPMX26_03173at 28.947 kb on + strand, within MPMX26_03173at 28.947 kb on - strand, within MPMX26_03173at 28.947 kb on - strand, within MPMX26_03173at 28.947 kb on - strand, within MPMX26_03173at 28.947 kb on - strand, within MPMX26_03173at 28.947 kb on - strand, within MPMX26_03173at 28.957 kb on - strand, within MPMX26_03173at 28.965 kb on - strand, within MPMX26_03173

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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26,604 - +1.4
26,609 - +1.1
26,766 + MPMX26_03170 0.21 -1.1
26,768 + MPMX26_03170 0.21 +0.7
26,776 - MPMX26_03170 0.22 +2.4
26,781 - MPMX26_03170 0.23 +1.0
26,822 - MPMX26_03170 0.29 +0.0
27,360 + +0.6
27,816 + MPMX26_03171 0.59 -0.4
27,816 + MPMX26_03171 0.59 +1.5
27,863 + MPMX26_03171 0.72 +1.4
27,888 + MPMX26_03171 0.78 +0.3
27,889 + MPMX26_03171 0.78 +0.5
27,889 + MPMX26_03171 0.78 +0.6
27,889 + MPMX26_03171 0.78 +1.8
27,889 + MPMX26_03171 0.78 +0.0
27,889 + MPMX26_03171 0.78 +1.4
27,894 + MPMX26_03171 0.80 +0.1
27,897 - MPMX26_03171 0.80 +1.2
27,931 + MPMX26_03171 0.89 +0.9
27,937 + +0.8
27,939 - +1.5
27,939 - +1.4
28,095 + MPMX26_03172 0.12 +1.8
28,105 + MPMX26_03172 0.13 +2.0
28,187 - MPMX26_03172 0.25 +1.4
28,222 + MPMX26_03172 0.30 +1.2
28,224 + MPMX26_03172 0.30 +0.6
28,224 + MPMX26_03172 0.30 -1.0
28,232 + MPMX26_03172 0.31 +0.7
28,321 - MPMX26_03172 0.43 -0.5
28,333 - MPMX26_03172 0.45 +1.6
28,360 + MPMX26_03172 0.49 -0.4
28,360 + MPMX26_03172 0.49 +1.9
28,360 + MPMX26_03172 0.49 +0.6
28,360 + MPMX26_03172 0.49 +0.8
28,360 + MPMX26_03172 0.49 +1.0
28,360 + MPMX26_03172 0.49 -0.4
28,426 + MPMX26_03172 0.58 +0.8
28,445 - MPMX26_03172 0.61 +0.7
28,566 - MPMX26_03172 0.78 +0.5
28,622 + MPMX26_03172 0.86 +0.7
28,667 - +1.0
28,699 - -0.2
28,699 - +0.4
28,777 - -1.0
28,777 - -0.5
28,779 - +0.5
28,797 + +3.4
28,805 - +1.8
28,826 + +0.8
28,866 - +1.3
28,866 - +0.4
28,911 - MPMX26_03173 0.12 +1.8
28,921 - MPMX26_03173 0.13 +1.2
28,932 + MPMX26_03173 0.14 -1.3
28,945 - MPMX26_03173 0.15 -1.6
28,945 - MPMX26_03173 0.15 +0.0
28,945 - MPMX26_03173 0.15 +1.0
28,945 - MPMX26_03173 0.15 +0.4
28,947 + MPMX26_03173 0.15 +0.4
28,947 - MPMX26_03173 0.15 -0.1
28,947 - MPMX26_03173 0.15 +0.2
28,947 - MPMX26_03173 0.15 -0.6
28,947 - MPMX26_03173 0.15 +1.0
28,947 - MPMX26_03173 0.15 +0.7
28,957 - MPMX26_03173 0.16 +0.8
28,965 - MPMX26_03173 0.16 -0.6

Or see this region's nucleotide sequence