Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03169 and MPMX26_03170 are separated by 631 nucleotides MPMX26_03170 and MPMX26_03171 are separated by 263 nucleotides MPMX26_03171 and MPMX26_03172 are separated by 39 nucleotides
MPMX26_03169: MPMX26_03169 - hypothetical protein, at 25,135 to 25,986
_03169
MPMX26_03170: MPMX26_03170 - IS6 family transposase IS1006, at 26,618 to 27,322
_03170
MPMX26_03171: MPMX26_03171 - Diacylglycerol kinase, at 27,586 to 27,972
_03171
MPMX26_03172: MPMX26_03172 - hypothetical protein, at 28,012 to 28,722
_03172
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1
2
3 at 25.619 kb on - strand, within MPMX26_03169 at 25.621 kb on + strand, within MPMX26_03169 at 25.650 kb on + strand, within MPMX26_03169 at 25.665 kb on + strand, within MPMX26_03169 at 25.722 kb on + strand, within MPMX26_03169 at 25.737 kb on + strand, within MPMX26_03169 at 25.737 kb on + strand, within MPMX26_03169 at 25.737 kb on + strand, within MPMX26_03169 at 25.737 kb on + strand, within MPMX26_03169 at 25.737 kb on + strand, within MPMX26_03169 at 25.754 kb on + strand, within MPMX26_03169 at 25.754 kb on + strand, within MPMX26_03169 at 25.754 kb on + strand, within MPMX26_03169 at 25.762 kb on - strand, within MPMX26_03169 at 25.843 kb on + strand, within MPMX26_03169 at 25.891 kb on + strand, within MPMX26_03169 at 25.958 kb on + strand at 25.958 kb on + strand at 25.982 kb on + strand at 25.987 kb on + strand at 25.987 kb on + strand at 26.025 kb on - strand at 26.243 kb on + strand at 26.312 kb on + strand at 26.346 kb on + strand at 26.346 kb on + strand at 26.354 kb on + strand at 26.354 kb on - strand at 26.393 kb on - strand at 26.395 kb on + strand at 26.558 kb on - strand at 26.604 kb on - strand at 26.609 kb on - strand at 26.766 kb on + strand, within MPMX26_03170 at 26.768 kb on + strand, within MPMX26_03170 at 26.776 kb on - strand, within MPMX26_03170 at 26.781 kb on - strand, within MPMX26_03170 at 26.822 kb on - strand, within MPMX26_03170 at 27.360 kb on + strand at 27.816 kb on + strand, within MPMX26_03171 at 27.816 kb on + strand, within MPMX26_03171 at 27.863 kb on + strand, within MPMX26_03171 at 27.888 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.894 kb on + strand, within MPMX26_03171 at 27.897 kb on - strand, within MPMX26_03171 at 27.931 kb on + strand, within MPMX26_03171 at 27.937 kb on + strand at 27.939 kb on - strand at 27.939 kb on - strand at 28.095 kb on + strand, within MPMX26_03172 at 28.105 kb on + strand, within MPMX26_03172 at 28.187 kb on - strand, within MPMX26_03172 at 28.222 kb on + strand, within MPMX26_03172 at 28.224 kb on + strand, within MPMX26_03172 at 28.224 kb on + strand, within MPMX26_03172 at 28.232 kb on + strand, within MPMX26_03172 at 28.321 kb on - strand, within MPMX26_03172
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 25,619 - MPMX26_03169 0.57 +3.4 25,621 + MPMX26_03169 0.57 -1.1 25,650 + MPMX26_03169 0.60 +0.6 25,665 + MPMX26_03169 0.62 +0.4 25,722 + MPMX26_03169 0.69 +0.8 25,737 + MPMX26_03169 0.71 +0.6 25,737 + MPMX26_03169 0.71 -0.5 25,737 + MPMX26_03169 0.71 -1.2 25,737 + MPMX26_03169 0.71 -0.5 25,737 + MPMX26_03169 0.71 -0.6 25,754 + MPMX26_03169 0.73 -0.2 25,754 + MPMX26_03169 0.73 -0.5 25,754 + MPMX26_03169 0.73 +1.0 25,762 - MPMX26_03169 0.74 +0.1 25,843 + MPMX26_03169 0.83 -1.3 25,891 + MPMX26_03169 0.89 -0.5 25,958 + -1.0 25,958 + -0.7 25,982 + +0.2 25,987 + -0.1 25,987 + +0.5 26,025 - +0.4 26,243 + +1.4 26,312 + +0.3 26,346 + +0.1 26,346 + +0.2 26,354 + +0.4 26,354 - +1.8 26,393 - +0.4 26,395 + +0.2 26,558 - +0.6 26,604 - +1.4 26,609 - +1.1 26,766 + MPMX26_03170 0.21 -1.1 26,768 + MPMX26_03170 0.21 +0.7 26,776 - MPMX26_03170 0.22 +2.4 26,781 - MPMX26_03170 0.23 +1.0 26,822 - MPMX26_03170 0.29 +0.0 27,360 + +0.6 27,816 + MPMX26_03171 0.59 -0.4 27,816 + MPMX26_03171 0.59 +1.5 27,863 + MPMX26_03171 0.72 +1.4 27,888 + MPMX26_03171 0.78 +0.3 27,889 + MPMX26_03171 0.78 +0.5 27,889 + MPMX26_03171 0.78 +0.6 27,889 + MPMX26_03171 0.78 +1.8 27,889 + MPMX26_03171 0.78 +0.0 27,889 + MPMX26_03171 0.78 +1.4 27,894 + MPMX26_03171 0.80 +0.1 27,897 - MPMX26_03171 0.80 +1.2 27,931 + MPMX26_03171 0.89 +0.9 27,937 + +0.8 27,939 - +1.5 27,939 - +1.4 28,095 + MPMX26_03172 0.12 +1.8 28,105 + MPMX26_03172 0.13 +2.0 28,187 - MPMX26_03172 0.25 +1.4 28,222 + MPMX26_03172 0.30 +1.2 28,224 + MPMX26_03172 0.30 +0.6 28,224 + MPMX26_03172 0.30 -1.0 28,232 + MPMX26_03172 0.31 +0.7 28,321 - MPMX26_03172 0.43 -0.5
Or see this region's nucleotide sequence