Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02222

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02221 and MPMX26_02222 overlap by 1 nucleotidesMPMX26_02222 and MPMX26_02223 overlap by 4 nucleotides MPMX26_02221: MPMX26_02221 - Colistin resistance protein EmrA, at 2,278,162 to 2,279,292 _02221 MPMX26_02222: MPMX26_02222 - hypothetical protein, at 2,279,292 to 2,280,422 _02222 MPMX26_02223: MPMX26_02223 - hypothetical protein, at 2,280,419 to 2,281,507 _02223 Position (kb) 2279 2280 2281Strain fitness (log2 ratio) -1 0 1 2at 2278.582 kb on + strand, within MPMX26_02221at 2278.752 kb on + strand, within MPMX26_02221at 2278.752 kb on + strand, within MPMX26_02221at 2278.762 kb on + strand, within MPMX26_02221at 2278.863 kb on + strand, within MPMX26_02221at 2278.947 kb on + strand, within MPMX26_02221at 2279.050 kb on + strand, within MPMX26_02221at 2280.291 kb on + strand, within MPMX26_02222

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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2,278,582 + MPMX26_02221 0.37 -0.1
2,278,752 + MPMX26_02221 0.52 +0.9
2,278,752 + MPMX26_02221 0.52 +1.9
2,278,762 + MPMX26_02221 0.53 +0.3
2,278,863 + MPMX26_02221 0.62 +0.2
2,278,947 + MPMX26_02221 0.69 +1.6
2,279,050 + MPMX26_02221 0.79 +0.7
2,280,291 + MPMX26_02222 0.88 +0.4

Or see this region's nucleotide sequence