Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02081

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02080 and MPMX26_02081 are separated by 753 nucleotidesMPMX26_02081 and MPMX26_02082 are separated by 359 nucleotidesMPMX26_02082 and MPMX26_02083 are separated by 42 nucleotides MPMX26_02080: MPMX26_02080 - hypothetical protein, at 2,142,528 to 2,142,770 _02080 MPMX26_02081: MPMX26_02081 - hypothetical protein, at 2,143,524 to 2,143,964 _02081 MPMX26_02082: MPMX26_02082 - hypothetical protein, at 2,144,324 to 2,144,644 _02082 MPMX26_02083: MPMX26_02083 - hypothetical protein, at 2,144,687 to 2,145,142 _02083 Position (kb) 2143 2144Strain fitness (log2 ratio) -1 0 1 2at 2142.622 kb on - strand, within MPMX26_02080at 2143.632 kb on - strand, within MPMX26_02081at 2143.802 kb on - strand, within MPMX26_02081at 2143.809 kb on - strand, within MPMX26_02081at 2143.839 kb on - strand, within MPMX26_02081at 2143.839 kb on - strand, within MPMX26_02081

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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2,142,622 - MPMX26_02080 0.39 +0.3
2,143,632 - MPMX26_02081 0.24 +0.9
2,143,802 - MPMX26_02081 0.63 -1.0
2,143,809 - MPMX26_02081 0.65 -0.4
2,143,839 - MPMX26_02081 0.71 +1.9
2,143,839 - MPMX26_02081 0.71 -0.8

Or see this region's nucleotide sequence