Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01712

Experiment: TSB with Dermcidin 2 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01710 and MPMX26_01711 are separated by 108 nucleotidesMPMX26_01711 and MPMX26_01712 are separated by 4 nucleotidesMPMX26_01712 and MPMX26_01713 are separated by 373 nucleotides MPMX26_01710: MPMX26_01710 - Transcriptional activator protein CzcR, at 1,766,528 to 1,767,199 _01710 MPMX26_01711: MPMX26_01711 - hypothetical protein, at 1,767,308 to 1,767,817 _01711 MPMX26_01712: MPMX26_01712 - 5-hydroxyisourate hydrolase, at 1,767,822 to 1,768,223 _01712 MPMX26_01713: MPMX26_01713 - Metal-pseudopaline receptor CntO, at 1,768,597 to 1,770,723 _01713 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1767.446 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.497 kb on + strand, within MPMX26_01711at 1767.526 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.574 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.580 kb on + strand, within MPMX26_01711at 1767.595 kb on + strand, within MPMX26_01711at 1767.617 kb on + strand, within MPMX26_01711at 1767.622 kb on + strand, within MPMX26_01711at 1767.637 kb on + strand, within MPMX26_01711at 1767.656 kb on + strand, within MPMX26_01711at 1767.701 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1767.746 kb on + strand, within MPMX26_01711at 1768.146 kb on + strand, within MPMX26_01712at 1768.146 kb on + strand, within MPMX26_01712at 1768.146 kb on + strand, within MPMX26_01712at 1768.155 kb on + strand, within MPMX26_01712at 1768.179 kb on + strand, within MPMX26_01712at 1768.179 kb on + strand, within MPMX26_01712at 1768.199 kb on + strandat 1768.690 kb on + strandat 1768.730 kb on + strandat 1768.752 kb on + strandat 1769.001 kb on + strand, within MPMX26_01713at 1769.001 kb on + strand, within MPMX26_01713at 1769.023 kb on + strand, within MPMX26_01713at 1769.032 kb on + strand, within MPMX26_01713at 1769.074 kb on + strand, within MPMX26_01713at 1769.074 kb on + strand, within MPMX26_01713at 1769.095 kb on + strand, within MPMX26_01713at 1769.095 kb on + strand, within MPMX26_01713at 1769.121 kb on + strand, within MPMX26_01713at 1769.172 kb on + strand, within MPMX26_01713

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
remove
1,767,446 + MPMX26_01711 0.27 +1.3
1,767,497 + MPMX26_01711 0.37 +1.9
1,767,497 + MPMX26_01711 0.37 +0.6
1,767,497 + MPMX26_01711 0.37 +1.3
1,767,497 + MPMX26_01711 0.37 +0.5
1,767,526 + MPMX26_01711 0.43 +1.3
1,767,574 + MPMX26_01711 0.52 +0.5
1,767,574 + MPMX26_01711 0.52 +0.5
1,767,574 + MPMX26_01711 0.52 +2.3
1,767,574 + MPMX26_01711 0.52 -0.3
1,767,574 + MPMX26_01711 0.52 -0.5
1,767,580 + MPMX26_01711 0.53 +0.3
1,767,580 + MPMX26_01711 0.53 +1.5
1,767,580 + MPMX26_01711 0.53 -0.1
1,767,580 + MPMX26_01711 0.53 -1.3
1,767,580 + MPMX26_01711 0.53 +1.3
1,767,580 + MPMX26_01711 0.53 +1.5
1,767,580 + MPMX26_01711 0.53 +1.5
1,767,595 + MPMX26_01711 0.56 +0.0
1,767,617 + MPMX26_01711 0.61 +0.0
1,767,622 + MPMX26_01711 0.62 -0.0
1,767,637 + MPMX26_01711 0.65 +1.3
1,767,656 + MPMX26_01711 0.68 +2.4
1,767,701 + MPMX26_01711 0.77 +1.0
1,767,746 + MPMX26_01711 0.86 +0.5
1,767,746 + MPMX26_01711 0.86 +1.6
1,767,746 + MPMX26_01711 0.86 +0.0
1,767,746 + MPMX26_01711 0.86 -0.1
1,768,146 + MPMX26_01712 0.81 +0.4
1,768,146 + MPMX26_01712 0.81 +0.9
1,768,146 + MPMX26_01712 0.81 +0.5
1,768,155 + MPMX26_01712 0.83 -1.8
1,768,179 + MPMX26_01712 0.89 +0.5
1,768,179 + MPMX26_01712 0.89 +1.3
1,768,199 + +2.9
1,768,690 + -0.5
1,768,730 + -0.3
1,768,752 + -0.8
1,769,001 + MPMX26_01713 0.19 +1.6
1,769,001 + MPMX26_01713 0.19 -0.2
1,769,023 + MPMX26_01713 0.20 -0.7
1,769,032 + MPMX26_01713 0.20 -0.3
1,769,074 + MPMX26_01713 0.22 -1.2
1,769,074 + MPMX26_01713 0.22 -0.9
1,769,095 + MPMX26_01713 0.23 +0.2
1,769,095 + MPMX26_01713 0.23 +0.5
1,769,121 + MPMX26_01713 0.25 +1.1
1,769,172 + MPMX26_01713 0.27 +0.4

Or see this region's nucleotide sequence