Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00989 and MPMX26_00990 are separated by 106 nucleotides MPMX26_00990 and MPMX26_00991 are separated by 53 nucleotides MPMX26_00991 and MPMX26_00992 are separated by 37 nucleotides MPMX26_00992 and MPMX26_00993 are separated by 57 nucleotides
MPMX26_00989: MPMX26_00989 - 4-hydroxybenzoate octaprenyltransferase, at 1,041,702 to 1,042,583
_00989
MPMX26_00990: MPMX26_00990 - hypothetical protein, at 1,042,690 to 1,043,997
_00990
MPMX26_00991: MPMX26_00991 - hypothetical protein, at 1,044,051 to 1,044,299
_00991
MPMX26_00992: MPMX26_00992 - hypothetical protein, at 1,044,337 to 1,044,780
_00992
MPMX26_00993: MPMX26_00993 - tRNA-Asn, at 1,044,838 to 1,044,913
_00993
Position (kb) 1042
1043
1044 Strain fitness (log2 ratio) -1
0
1
2 at 1041.699 kb on + strand at 1043.184 kb on + strand, within MPMX26_00990 at 1043.844 kb on + strand, within MPMX26_00990 at 1044.168 kb on + strand, within MPMX26_00991 at 1044.182 kb on + strand, within MPMX26_00991 at 1044.182 kb on + strand, within MPMX26_00991
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 1,041,699 + +0.3 1,043,184 + MPMX26_00990 0.38 +2.5 1,043,844 + MPMX26_00990 0.88 -0.3 1,044,168 + MPMX26_00991 0.47 +0.5 1,044,182 + MPMX26_00991 0.53 +0.2 1,044,182 + MPMX26_00991 0.53 -0.1
Or see this region's nucleotide sequence