Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00976 and MPMX26_00977 are separated by 9 nucleotides MPMX26_00977 and MPMX26_00978 are separated by 136 nucleotides MPMX26_00978 and MPMX26_00979 are separated by 67 nucleotides
MPMX26_00976: MPMX26_00976 - Uroporphyrinogen decarboxylase, at 1,028,859 to 1,029,932
_00976
MPMX26_00977: MPMX26_00977 - hypothetical protein, at 1,029,942 to 1,030,754
_00977
MPMX26_00978: MPMX26_00978 - hypothetical protein, at 1,030,891 to 1,031,361
_00978
MPMX26_00979: MPMX26_00979 - hypothetical protein, at 1,031,429 to 1,033,315
_00979
Position (kb)
1030
1031
1032 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1029.905 kb on + strand at 1029.911 kb on - strand at 1030.515 kb on + strand, within MPMX26_00977 at 1030.713 kb on + strand at 1030.918 kb on + strand at 1030.930 kb on + strand at 1030.931 kb on + strand at 1030.969 kb on + strand, within MPMX26_00978 at 1030.969 kb on + strand, within MPMX26_00978 at 1030.983 kb on + strand, within MPMX26_00978 at 1030.983 kb on + strand, within MPMX26_00978 at 1030.983 kb on + strand, within MPMX26_00978 at 1030.993 kb on + strand, within MPMX26_00978 at 1030.993 kb on + strand, within MPMX26_00978 at 1030.993 kb on + strand, within MPMX26_00978 at 1030.993 kb on + strand, within MPMX26_00978 at 1030.993 kb on + strand, within MPMX26_00978 at 1031.056 kb on + strand, within MPMX26_00978 at 1031.063 kb on + strand, within MPMX26_00978 at 1031.084 kb on + strand, within MPMX26_00978 at 1031.089 kb on + strand, within MPMX26_00978 at 1031.096 kb on + strand, within MPMX26_00978 at 1031.110 kb on + strand, within MPMX26_00978 at 1031.170 kb on + strand, within MPMX26_00978 at 1031.175 kb on + strand, within MPMX26_00978 at 1031.294 kb on + strand, within MPMX26_00978 at 1031.301 kb on + strand, within MPMX26_00978 at 1031.343 kb on + strand at 1031.343 kb on + strand at 1031.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 1,029,905 + -0.1 1,029,911 - +0.1 1,030,515 + MPMX26_00977 0.70 +0.6 1,030,713 + +1.3 1,030,918 + +0.2 1,030,930 + +0.6 1,030,931 + +2.7 1,030,969 + MPMX26_00978 0.17 -0.2 1,030,969 + MPMX26_00978 0.17 +0.2 1,030,983 + MPMX26_00978 0.20 -0.4 1,030,983 + MPMX26_00978 0.20 +0.1 1,030,983 + MPMX26_00978 0.20 -0.6 1,030,993 + MPMX26_00978 0.22 -0.1 1,030,993 + MPMX26_00978 0.22 -0.4 1,030,993 + MPMX26_00978 0.22 -0.7 1,030,993 + MPMX26_00978 0.22 -0.5 1,030,993 + MPMX26_00978 0.22 +0.4 1,031,056 + MPMX26_00978 0.35 -0.6 1,031,063 + MPMX26_00978 0.37 -0.3 1,031,084 + MPMX26_00978 0.41 +0.9 1,031,089 + MPMX26_00978 0.42 -0.9 1,031,096 + MPMX26_00978 0.44 +1.3 1,031,110 + MPMX26_00978 0.46 -1.5 1,031,170 + MPMX26_00978 0.59 -2.0 1,031,175 + MPMX26_00978 0.60 -0.3 1,031,294 + MPMX26_00978 0.86 +0.1 1,031,301 + MPMX26_00978 0.87 -1.1 1,031,343 + -1.5 1,031,343 + +0.8 1,031,350 + +0.1
Or see this region's nucleotide sequence