Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00978

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00976 and MPMX26_00977 are separated by 9 nucleotidesMPMX26_00977 and MPMX26_00978 are separated by 136 nucleotidesMPMX26_00978 and MPMX26_00979 are separated by 67 nucleotides MPMX26_00976: MPMX26_00976 - Uroporphyrinogen decarboxylase, at 1,028,859 to 1,029,932 _00976 MPMX26_00977: MPMX26_00977 - hypothetical protein, at 1,029,942 to 1,030,754 _00977 MPMX26_00978: MPMX26_00978 - hypothetical protein, at 1,030,891 to 1,031,361 _00978 MPMX26_00979: MPMX26_00979 - hypothetical protein, at 1,031,429 to 1,033,315 _00979 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2at 1029.905 kb on + strandat 1029.911 kb on - strandat 1030.515 kb on + strand, within MPMX26_00977at 1030.713 kb on + strandat 1030.918 kb on + strandat 1030.930 kb on + strandat 1030.931 kb on + strandat 1030.969 kb on + strand, within MPMX26_00978at 1030.969 kb on + strand, within MPMX26_00978at 1030.983 kb on + strand, within MPMX26_00978at 1030.983 kb on + strand, within MPMX26_00978at 1030.983 kb on + strand, within MPMX26_00978at 1030.993 kb on + strand, within MPMX26_00978at 1030.993 kb on + strand, within MPMX26_00978at 1030.993 kb on + strand, within MPMX26_00978at 1030.993 kb on + strand, within MPMX26_00978at 1030.993 kb on + strand, within MPMX26_00978at 1031.056 kb on + strand, within MPMX26_00978at 1031.063 kb on + strand, within MPMX26_00978at 1031.084 kb on + strand, within MPMX26_00978at 1031.089 kb on + strand, within MPMX26_00978at 1031.096 kb on + strand, within MPMX26_00978at 1031.110 kb on + strand, within MPMX26_00978at 1031.170 kb on + strand, within MPMX26_00978at 1031.175 kb on + strand, within MPMX26_00978at 1031.294 kb on + strand, within MPMX26_00978at 1031.301 kb on + strand, within MPMX26_00978at 1031.343 kb on + strandat 1031.343 kb on + strandat 1031.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,029,905 + -0.1
1,029,911 - +0.1
1,030,515 + MPMX26_00977 0.70 +0.6
1,030,713 + +1.3
1,030,918 + +0.2
1,030,930 + +0.6
1,030,931 + +2.7
1,030,969 + MPMX26_00978 0.17 -0.2
1,030,969 + MPMX26_00978 0.17 +0.2
1,030,983 + MPMX26_00978 0.20 -0.4
1,030,983 + MPMX26_00978 0.20 +0.1
1,030,983 + MPMX26_00978 0.20 -0.6
1,030,993 + MPMX26_00978 0.22 -0.1
1,030,993 + MPMX26_00978 0.22 -0.4
1,030,993 + MPMX26_00978 0.22 -0.7
1,030,993 + MPMX26_00978 0.22 -0.5
1,030,993 + MPMX26_00978 0.22 +0.4
1,031,056 + MPMX26_00978 0.35 -0.6
1,031,063 + MPMX26_00978 0.37 -0.3
1,031,084 + MPMX26_00978 0.41 +0.9
1,031,089 + MPMX26_00978 0.42 -0.9
1,031,096 + MPMX26_00978 0.44 +1.3
1,031,110 + MPMX26_00978 0.46 -1.5
1,031,170 + MPMX26_00978 0.59 -2.0
1,031,175 + MPMX26_00978 0.60 -0.3
1,031,294 + MPMX26_00978 0.86 +0.1
1,031,301 + MPMX26_00978 0.87 -1.1
1,031,343 + -1.5
1,031,343 + +0.8
1,031,350 + +0.1

Or see this region's nucleotide sequence