Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00969

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00968 and MPMX26_00969 are separated by 29 nucleotidesMPMX26_00969 and MPMX26_00970 are separated by 34 nucleotidesMPMX26_00970 and MPMX26_00971 are separated by 2 nucleotides MPMX26_00968: MPMX26_00968 - hypothetical protein, at 1,018,069 to 1,019,490 _00968 MPMX26_00969: MPMX26_00969 - hypothetical protein, at 1,019,520 to 1,023,308 _00969 MPMX26_00970: MPMX26_00970 - hypothetical protein, at 1,023,343 to 1,024,302 _00970 MPMX26_00971: MPMX26_00971 - Outer membrane protein A, at 1,024,305 to 1,025,066 _00971 Position (kb) 1019 1020 1021 1022 1023 1024Strain fitness (log2 ratio) -1 0 1 2 3at 1019.189 kb on - strand, within MPMX26_00968at 1019.250 kb on + strand, within MPMX26_00968at 1019.329 kb on + strand, within MPMX26_00968at 1019.390 kb on + strandat 1019.571 kb on + strandat 1019.600 kb on + strandat 1019.694 kb on + strandat 1019.699 kb on + strandat 1019.715 kb on + strandat 1019.727 kb on + strandat 1019.883 kb on + strandat 1019.997 kb on + strand, within MPMX26_00969at 1019.997 kb on + strand, within MPMX26_00969at 1020.039 kb on + strand, within MPMX26_00969at 1020.065 kb on + strand, within MPMX26_00969at 1020.282 kb on + strand, within MPMX26_00969at 1020.282 kb on + strand, within MPMX26_00969at 1020.375 kb on + strand, within MPMX26_00969at 1020.474 kb on + strand, within MPMX26_00969at 1020.728 kb on + strand, within MPMX26_00969at 1020.837 kb on + strand, within MPMX26_00969at 1020.837 kb on + strand, within MPMX26_00969at 1021.010 kb on + strand, within MPMX26_00969at 1021.257 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.259 kb on + strand, within MPMX26_00969at 1021.382 kb on + strand, within MPMX26_00969at 1021.440 kb on + strand, within MPMX26_00969at 1021.469 kb on + strand, within MPMX26_00969at 1021.545 kb on + strand, within MPMX26_00969at 1021.551 kb on + strand, within MPMX26_00969at 1021.551 kb on + strand, within MPMX26_00969at 1021.551 kb on + strand, within MPMX26_00969at 1021.579 kb on - strand, within MPMX26_00969at 1021.667 kb on + strand, within MPMX26_00969at 1021.839 kb on + strand, within MPMX26_00969at 1021.892 kb on + strand, within MPMX26_00969at 1021.941 kb on + strand, within MPMX26_00969at 1021.977 kb on + strand, within MPMX26_00969at 1022.046 kb on + strand, within MPMX26_00969at 1022.574 kb on + strand, within MPMX26_00969at 1022.865 kb on + strand, within MPMX26_00969at 1022.870 kb on + strand, within MPMX26_00969at 1022.870 kb on + strand, within MPMX26_00969at 1022.870 kb on + strand, within MPMX26_00969at 1022.892 kb on + strand, within MPMX26_00969at 1022.898 kb on + strand, within MPMX26_00969at 1024.210 kb on + strandat 1024.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,019,189 - MPMX26_00968 0.79 -1.0
1,019,250 + MPMX26_00968 0.83 +2.9
1,019,329 + MPMX26_00968 0.89 +0.3
1,019,390 + -0.0
1,019,571 + +1.4
1,019,600 + +1.5
1,019,694 + +1.0
1,019,699 + +2.5
1,019,715 + +2.9
1,019,727 + +0.9
1,019,883 + +1.5
1,019,997 + MPMX26_00969 0.13 -0.4
1,019,997 + MPMX26_00969 0.13 -1.4
1,020,039 + MPMX26_00969 0.14 -0.4
1,020,065 + MPMX26_00969 0.14 -0.8
1,020,282 + MPMX26_00969 0.20 +1.3
1,020,282 + MPMX26_00969 0.20 -1.1
1,020,375 + MPMX26_00969 0.23 +0.7
1,020,474 + MPMX26_00969 0.25 -0.1
1,020,728 + MPMX26_00969 0.32 +0.6
1,020,837 + MPMX26_00969 0.35 -1.7
1,020,837 + MPMX26_00969 0.35 +0.3
1,021,010 + MPMX26_00969 0.39 +0.6
1,021,257 + MPMX26_00969 0.46 -0.3
1,021,259 + MPMX26_00969 0.46 +0.3
1,021,259 + MPMX26_00969 0.46 +1.7
1,021,259 + MPMX26_00969 0.46 +0.8
1,021,259 + MPMX26_00969 0.46 +0.6
1,021,259 + MPMX26_00969 0.46 +0.3
1,021,259 + MPMX26_00969 0.46 +0.6
1,021,382 + MPMX26_00969 0.49 -0.3
1,021,440 + MPMX26_00969 0.51 +0.6
1,021,469 + MPMX26_00969 0.51 +1.3
1,021,545 + MPMX26_00969 0.53 +1.3
1,021,551 + MPMX26_00969 0.54 -0.3
1,021,551 + MPMX26_00969 0.54 -0.1
1,021,551 + MPMX26_00969 0.54 -0.9
1,021,579 - MPMX26_00969 0.54 +0.3
1,021,667 + MPMX26_00969 0.57 +1.1
1,021,839 + MPMX26_00969 0.61 -0.0
1,021,892 + MPMX26_00969 0.63 +0.3
1,021,941 + MPMX26_00969 0.64 +0.9
1,021,977 + MPMX26_00969 0.65 +0.9
1,022,046 + MPMX26_00969 0.67 +2.0
1,022,574 + MPMX26_00969 0.81 -0.1
1,022,865 + MPMX26_00969 0.88 -0.3
1,022,870 + MPMX26_00969 0.88 +0.1
1,022,870 + MPMX26_00969 0.88 +1.5
1,022,870 + MPMX26_00969 0.88 -0.3
1,022,892 + MPMX26_00969 0.89 -1.4
1,022,898 + MPMX26_00969 0.89 +0.6
1,024,210 + +0.3
1,024,219 + +0.3

Or see this region's nucleotide sequence