Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00191

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00189 and MPMX26_00190 overlap by 4 nucleotidesMPMX26_00190 and MPMX26_00191 are separated by 9 nucleotidesMPMX26_00191 and MPMX26_00192 are separated by 9 nucleotidesMPMX26_00192 and MPMX26_00193 are separated by 166 nucleotides MPMX26_00189: MPMX26_00189 - hypothetical protein, at 204,263 to 205,045 _00189 MPMX26_00190: MPMX26_00190 - hypothetical protein, at 205,042 to 205,890 _00190 MPMX26_00191: MPMX26_00191 - hypothetical protein, at 205,900 to 207,093 _00191 MPMX26_00192: MPMX26_00192 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 207,103 to 207,540 _00192 MPMX26_00193: MPMX26_00193 - Trans-acting regulatory protein HvrA, at 207,707 to 208,033 _00193 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.010 kb on + strandat 205.010 kb on + strandat 205.010 kb on + strandat 205.010 kb on + strandat 205.015 kb on + strandat 205.034 kb on + strandat 205.110 kb on + strandat 205.110 kb on + strandat 205.157 kb on + strand, within MPMX26_00190at 205.157 kb on + strand, within MPMX26_00190at 205.162 kb on + strand, within MPMX26_00190at 205.167 kb on + strand, within MPMX26_00190at 205.167 kb on + strand, within MPMX26_00190at 205.172 kb on + strand, within MPMX26_00190at 205.172 kb on + strand, within MPMX26_00190at 205.191 kb on + strand, within MPMX26_00190at 205.191 kb on + strand, within MPMX26_00190at 205.191 kb on + strand, within MPMX26_00190at 205.234 kb on + strand, within MPMX26_00190at 205.248 kb on + strand, within MPMX26_00190at 205.258 kb on + strand, within MPMX26_00190at 205.306 kb on + strand, within MPMX26_00190at 205.322 kb on + strand, within MPMX26_00190at 205.343 kb on + strand, within MPMX26_00190at 205.363 kb on + strand, within MPMX26_00190at 205.387 kb on + strand, within MPMX26_00190at 205.387 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.409 kb on + strand, within MPMX26_00190at 205.474 kb on + strand, within MPMX26_00190at 205.491 kb on + strand, within MPMX26_00190at 205.491 kb on + strand, within MPMX26_00190at 205.491 kb on + strand, within MPMX26_00190at 205.491 kb on + strand, within MPMX26_00190at 205.491 kb on + strand, within MPMX26_00190at 205.556 kb on + strand, within MPMX26_00190at 205.690 kb on + strand, within MPMX26_00190at 205.704 kb on + strand, within MPMX26_00190at 205.707 kb on + strand, within MPMX26_00190at 205.718 kb on + strand, within MPMX26_00190at 205.728 kb on + strand, within MPMX26_00190at 205.792 kb on + strand, within MPMX26_00190at 205.885 kb on + strandat 205.898 kb on + strandat 205.898 kb on + strandat 205.898 kb on + strandat 205.898 kb on + strandat 205.919 kb on + strandat 205.919 kb on + strandat 205.927 kb on + strandat 205.929 kb on + strandat 205.929 kb on + strandat 205.929 kb on + strandat 205.929 kb on + strandat 205.929 kb on + strandat 205.929 kb on + strandat 205.942 kb on + strandat 205.960 kb on + strandat 205.960 kb on + strandat 205.965 kb on + strandat 205.971 kb on + strandat 205.984 kb on + strandat 205.984 kb on + strandat 205.984 kb on + strandat 206.079 kb on + strand, within MPMX26_00191at 206.079 kb on + strand, within MPMX26_00191at 206.079 kb on + strand, within MPMX26_00191at 206.079 kb on + strand, within MPMX26_00191at 206.079 kb on + strand, within MPMX26_00191at 206.084 kb on + strand, within MPMX26_00191at 206.108 kb on + strand, within MPMX26_00191at 206.108 kb on + strand, within MPMX26_00191at 206.108 kb on + strand, within MPMX26_00191at 206.108 kb on + strand, within MPMX26_00191at 206.116 kb on - strand, within MPMX26_00191at 206.118 kb on + strand, within MPMX26_00191at 206.118 kb on + strand, within MPMX26_00191at 206.118 kb on + strand, within MPMX26_00191at 206.118 kb on + strand, within MPMX26_00191at 206.132 kb on + strand, within MPMX26_00191at 206.169 kb on + strand, within MPMX26_00191at 206.187 kb on + strand, within MPMX26_00191at 206.187 kb on + strand, within MPMX26_00191at 206.193 kb on + strand, within MPMX26_00191at 206.242 kb on + strand, within MPMX26_00191at 206.242 kb on + strand, within MPMX26_00191at 206.242 kb on + strand, within MPMX26_00191at 206.269 kb on + strand, within MPMX26_00191at 206.269 kb on + strand, within MPMX26_00191at 206.286 kb on + strand, within MPMX26_00191at 206.311 kb on + strand, within MPMX26_00191at 206.336 kb on + strand, within MPMX26_00191at 206.351 kb on + strand, within MPMX26_00191at 206.397 kb on + strand, within MPMX26_00191at 206.430 kb on + strand, within MPMX26_00191at 206.431 kb on + strand, within MPMX26_00191at 206.444 kb on + strand, within MPMX26_00191at 206.477 kb on + strand, within MPMX26_00191at 206.487 kb on + strand, within MPMX26_00191at 206.487 kb on + strand, within MPMX26_00191at 206.515 kb on + strand, within MPMX26_00191at 206.521 kb on + strand, within MPMX26_00191at 206.587 kb on + strand, within MPMX26_00191at 206.665 kb on + strand, within MPMX26_00191at 206.893 kb on + strand, within MPMX26_00191at 206.945 kb on + strand, within MPMX26_00191at 207.000 kb on + strandat 207.000 kb on + strandat 207.111 kb on + strandat 207.119 kb on - strandat 207.131 kb on + strandat 207.162 kb on + strand, within MPMX26_00192at 207.167 kb on + strand, within MPMX26_00192at 207.235 kb on + strand, within MPMX26_00192at 207.235 kb on + strand, within MPMX26_00192at 207.235 kb on + strand, within MPMX26_00192at 207.244 kb on + strand, within MPMX26_00192at 207.258 kb on + strand, within MPMX26_00192at 207.275 kb on + strand, within MPMX26_00192at 207.275 kb on + strand, within MPMX26_00192at 207.285 kb on + strand, within MPMX26_00192at 207.294 kb on + strand, within MPMX26_00192at 207.306 kb on + strand, within MPMX26_00192at 207.306 kb on + strand, within MPMX26_00192at 207.338 kb on + strand, within MPMX26_00192at 207.338 kb on + strand, within MPMX26_00192at 207.338 kb on + strand, within MPMX26_00192at 207.338 kb on + strand, within MPMX26_00192at 207.348 kb on + strand, within MPMX26_00192at 207.349 kb on + strand, within MPMX26_00192at 207.382 kb on + strand, within MPMX26_00192at 207.395 kb on - strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.442 kb on + strand, within MPMX26_00192at 207.585 kb on + strandat 207.687 kb on + strandat 207.687 kb on + strandat 207.687 kb on + strandat 207.687 kb on + strandat 207.687 kb on + strandat 207.687 kb on + strandat 207.701 kb on + strandat 207.757 kb on + strand, within MPMX26_00193at 207.802 kb on + strand, within MPMX26_00193at 207.813 kb on + strand, within MPMX26_00193at 207.845 kb on + strand, within MPMX26_00193at 207.845 kb on + strand, within MPMX26_00193at 207.845 kb on + strand, within MPMX26_00193at 207.845 kb on + strand, within MPMX26_00193at 207.852 kb on + strand, within MPMX26_00193at 207.892 kb on + strand, within MPMX26_00193at 207.901 kb on + strand, within MPMX26_00193at 207.949 kb on + strand, within MPMX26_00193at 207.949 kb on + strand, within MPMX26_00193at 207.981 kb on + strand, within MPMX26_00193at 207.981 kb on + strand, within MPMX26_00193at 207.981 kb on + strand, within MPMX26_00193at 207.995 kb on + strand, within MPMX26_00193at 208.058 kb on + strandat 208.058 kb on + strandat 208.058 kb on + strandat 208.058 kb on + strandat 208.058 kb on + strandat 208.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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205,010 + -0.6
205,010 + -0.5
205,010 + -0.1
205,010 + -0.4
205,015 + -0.0
205,034 + +0.0
205,110 + +0.4
205,110 + +0.0
205,157 + MPMX26_00190 0.14 -1.2
205,157 + MPMX26_00190 0.14 -0.7
205,162 + MPMX26_00190 0.14 +0.6
205,167 + MPMX26_00190 0.15 -0.4
205,167 + MPMX26_00190 0.15 +1.0
205,172 + MPMX26_00190 0.15 +0.6
205,172 + MPMX26_00190 0.15 -0.1
205,191 + MPMX26_00190 0.18 +1.2
205,191 + MPMX26_00190 0.18 +0.3
205,191 + MPMX26_00190 0.18 +2.3
205,234 + MPMX26_00190 0.23 -1.5
205,248 + MPMX26_00190 0.24 +0.5
205,258 + MPMX26_00190 0.25 -0.6
205,306 + MPMX26_00190 0.31 -0.6
205,322 + MPMX26_00190 0.33 +0.9
205,343 + MPMX26_00190 0.35 +0.6
205,363 + MPMX26_00190 0.38 +1.6
205,387 + MPMX26_00190 0.41 +2.5
205,387 + MPMX26_00190 0.41 +0.1
205,409 + MPMX26_00190 0.43 +1.3
205,409 + MPMX26_00190 0.43 -0.8
205,409 + MPMX26_00190 0.43 -0.2
205,409 + MPMX26_00190 0.43 -1.6
205,409 + MPMX26_00190 0.43 -1.0
205,409 + MPMX26_00190 0.43 +2.0
205,474 + MPMX26_00190 0.51 -0.2
205,491 + MPMX26_00190 0.53 +0.2
205,491 + MPMX26_00190 0.53 +1.6
205,491 + MPMX26_00190 0.53 -0.4
205,491 + MPMX26_00190 0.53 -0.8
205,491 + MPMX26_00190 0.53 -1.0
205,556 + MPMX26_00190 0.61 -0.1
205,690 + MPMX26_00190 0.76 -0.9
205,704 + MPMX26_00190 0.78 -0.1
205,707 + MPMX26_00190 0.78 +0.8
205,718 + MPMX26_00190 0.80 -0.4
205,728 + MPMX26_00190 0.81 -0.1
205,792 + MPMX26_00190 0.88 -0.3
205,885 + +0.6
205,898 + +0.6
205,898 + +1.5
205,898 + -0.1
205,898 + +0.6
205,919 + -0.2
205,919 + +2.2
205,927 + +0.7
205,929 + -0.3
205,929 + +1.1
205,929 + -1.2
205,929 + -0.6
205,929 + +0.9
205,929 + +0.5
205,942 + -0.7
205,960 + -0.3
205,960 + -0.1
205,965 + -1.2
205,971 + +0.0
205,984 + -0.5
205,984 + +1.0
205,984 + -0.5
206,079 + MPMX26_00191 0.15 -1.6
206,079 + MPMX26_00191 0.15 -0.8
206,079 + MPMX26_00191 0.15 +0.3
206,079 + MPMX26_00191 0.15 +0.9
206,079 + MPMX26_00191 0.15 -1.1
206,084 + MPMX26_00191 0.15 +0.3
206,108 + MPMX26_00191 0.17 +1.3
206,108 + MPMX26_00191 0.17 -2.1
206,108 + MPMX26_00191 0.17 -0.4
206,108 + MPMX26_00191 0.17 +0.0
206,116 - MPMX26_00191 0.18 -1.8
206,118 + MPMX26_00191 0.18 -0.7
206,118 + MPMX26_00191 0.18 +0.3
206,118 + MPMX26_00191 0.18 -0.6
206,118 + MPMX26_00191 0.18 -1.0
206,132 + MPMX26_00191 0.19 -0.4
206,169 + MPMX26_00191 0.23 -0.1
206,187 + MPMX26_00191 0.24 -0.6
206,187 + MPMX26_00191 0.24 +0.6
206,193 + MPMX26_00191 0.25 -0.1
206,242 + MPMX26_00191 0.29 +0.3
206,242 + MPMX26_00191 0.29 -0.5
206,242 + MPMX26_00191 0.29 -0.1
206,269 + MPMX26_00191 0.31 -0.6
206,269 + MPMX26_00191 0.31 +0.1
206,286 + MPMX26_00191 0.32 -0.3
206,311 + MPMX26_00191 0.34 -0.4
206,336 + MPMX26_00191 0.37 +0.5
206,351 + MPMX26_00191 0.38 -1.0
206,397 + MPMX26_00191 0.42 -0.3
206,430 + MPMX26_00191 0.44 +0.3
206,431 + MPMX26_00191 0.44 +0.1
206,444 + MPMX26_00191 0.46 +1.1
206,477 + MPMX26_00191 0.48 +0.1
206,487 + MPMX26_00191 0.49 -1.6
206,487 + MPMX26_00191 0.49 +0.4
206,515 + MPMX26_00191 0.52 +0.7
206,521 + MPMX26_00191 0.52 -0.8
206,587 + MPMX26_00191 0.58 -0.3
206,665 + MPMX26_00191 0.64 -0.5
206,893 + MPMX26_00191 0.83 -0.1
206,945 + MPMX26_00191 0.88 +0.6
207,000 + -0.2
207,000 + -0.2
207,111 + +0.4
207,119 - +0.9
207,131 + -0.7
207,162 + MPMX26_00192 0.13 -0.8
207,167 + MPMX26_00192 0.15 +1.5
207,235 + MPMX26_00192 0.30 +0.0
207,235 + MPMX26_00192 0.30 -0.4
207,235 + MPMX26_00192 0.30 +0.5
207,244 + MPMX26_00192 0.32 -0.1
207,258 + MPMX26_00192 0.35 +0.9
207,275 + MPMX26_00192 0.39 -0.0
207,275 + MPMX26_00192 0.39 +0.6
207,285 + MPMX26_00192 0.42 -0.3
207,294 + MPMX26_00192 0.44 -0.3
207,306 + MPMX26_00192 0.46 +0.1
207,306 + MPMX26_00192 0.46 -0.1
207,338 + MPMX26_00192 0.54 +0.8
207,338 + MPMX26_00192 0.54 +1.5
207,338 + MPMX26_00192 0.54 +0.3
207,338 + MPMX26_00192 0.54 +1.1
207,348 + MPMX26_00192 0.56 +0.3
207,349 + MPMX26_00192 0.56 -0.3
207,382 + MPMX26_00192 0.64 +1.7
207,395 - MPMX26_00192 0.67 -1.2
207,442 + MPMX26_00192 0.77 -1.2
207,442 + MPMX26_00192 0.77 +1.9
207,442 + MPMX26_00192 0.77 +0.6
207,442 + MPMX26_00192 0.77 -0.2
207,442 + MPMX26_00192 0.77 -1.7
207,442 + MPMX26_00192 0.77 +0.7
207,442 + MPMX26_00192 0.77 -0.8
207,442 + MPMX26_00192 0.77 -0.2
207,442 + MPMX26_00192 0.77 -0.3
207,585 + +0.2
207,687 + +1.6
207,687 + -0.4
207,687 + -1.8
207,687 + +1.3
207,687 + -0.5
207,687 + -0.3
207,701 + +0.3
207,757 + MPMX26_00193 0.15 -0.1
207,802 + MPMX26_00193 0.29 +0.9
207,813 + MPMX26_00193 0.32 +0.9
207,845 + MPMX26_00193 0.42 -1.2
207,845 + MPMX26_00193 0.42 -0.9
207,845 + MPMX26_00193 0.42 -0.5
207,845 + MPMX26_00193 0.42 -0.3
207,852 + MPMX26_00193 0.44 -0.7
207,892 + MPMX26_00193 0.57 -0.6
207,901 + MPMX26_00193 0.59 -2.3
207,949 + MPMX26_00193 0.74 -0.8
207,949 + MPMX26_00193 0.74 -1.0
207,981 + MPMX26_00193 0.84 -1.4
207,981 + MPMX26_00193 0.84 -0.3
207,981 + MPMX26_00193 0.84 -0.4
207,995 + MPMX26_00193 0.88 -1.2
208,058 + +0.4
208,058 + -2.7
208,058 + +0.0
208,058 + -0.2
208,058 + -0.3
208,058 + -0.0

Or see this region's nucleotide sequence