Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00168

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00167 and MPMX26_00168 are separated by 123 nucleotidesMPMX26_00168 and MPMX26_00169 are separated by 102 nucleotides MPMX26_00167: MPMX26_00167 - Homoserine dehydrogenase, at 181,215 to 182,519 _00167 MPMX26_00168: MPMX26_00168 - hypothetical protein, at 182,643 to 183,458 _00168 MPMX26_00169: MPMX26_00169 - Tyrosine recombinase XerD, at 183,561 to 184,481 _00169 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 182.178 kb on - strand, within MPMX26_00167at 182.536 kb on - strandat 182.591 kb on - strandat 182.604 kb on - strandat 182.688 kb on - strandat 182.702 kb on - strandat 182.702 kb on - strandat 182.702 kb on - strandat 182.717 kb on - strandat 182.717 kb on - strandat 182.737 kb on - strand, within MPMX26_00168at 182.743 kb on - strand, within MPMX26_00168at 182.743 kb on - strand, within MPMX26_00168at 182.745 kb on - strand, within MPMX26_00168at 182.745 kb on - strand, within MPMX26_00168at 182.745 kb on - strand, within MPMX26_00168at 182.760 kb on - strand, within MPMX26_00168at 182.760 kb on - strand, within MPMX26_00168at 182.760 kb on - strand, within MPMX26_00168at 182.760 kb on - strand, within MPMX26_00168at 182.762 kb on - strand, within MPMX26_00168at 182.784 kb on - strand, within MPMX26_00168at 182.792 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.804 kb on - strand, within MPMX26_00168at 182.806 kb on - strand, within MPMX26_00168at 182.806 kb on - strand, within MPMX26_00168at 182.806 kb on - strand, within MPMX26_00168at 182.806 kb on - strand, within MPMX26_00168at 182.813 kb on - strand, within MPMX26_00168at 182.846 kb on - strand, within MPMX26_00168at 182.846 kb on - strand, within MPMX26_00168at 182.848 kb on - strand, within MPMX26_00168at 182.892 kb on - strand, within MPMX26_00168at 182.905 kb on - strand, within MPMX26_00168at 182.907 kb on - strand, within MPMX26_00168at 182.916 kb on - strand, within MPMX26_00168at 182.936 kb on - strand, within MPMX26_00168at 182.936 kb on - strand, within MPMX26_00168at 182.945 kb on - strand, within MPMX26_00168at 182.959 kb on - strand, within MPMX26_00168at 182.968 kb on - strand, within MPMX26_00168at 182.968 kb on - strand, within MPMX26_00168at 182.971 kb on - strand, within MPMX26_00168at 183.058 kb on - strand, within MPMX26_00168at 183.105 kb on - strand, within MPMX26_00168at 183.105 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.107 kb on - strand, within MPMX26_00168at 183.126 kb on - strand, within MPMX26_00168at 183.131 kb on - strand, within MPMX26_00168at 183.140 kb on - strand, within MPMX26_00168at 183.196 kb on - strand, within MPMX26_00168at 183.204 kb on - strand, within MPMX26_00168at 183.206 kb on - strand, within MPMX26_00168at 183.206 kb on - strand, within MPMX26_00168at 183.211 kb on - strand, within MPMX26_00168at 183.220 kb on - strand, within MPMX26_00168at 183.222 kb on - strand, within MPMX26_00168at 183.235 kb on - strand, within MPMX26_00168at 183.255 kb on - strand, within MPMX26_00168at 183.277 kb on + strand, within MPMX26_00168at 183.277 kb on + strand, within MPMX26_00168at 183.277 kb on + strand, within MPMX26_00168at 183.277 kb on + strand, within MPMX26_00168at 183.277 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.285 kb on - strand, within MPMX26_00168at 183.290 kb on - strand, within MPMX26_00168at 183.290 kb on - strand, within MPMX26_00168at 183.322 kb on - strand, within MPMX26_00168at 183.322 kb on - strand, within MPMX26_00168at 183.323 kb on - strand, within MPMX26_00168at 183.323 kb on - strand, within MPMX26_00168at 183.323 kb on - strand, within MPMX26_00168at 183.329 kb on - strand, within MPMX26_00168at 183.329 kb on - strand, within MPMX26_00168at 183.331 kb on - strand, within MPMX26_00168at 183.363 kb on - strand, within MPMX26_00168at 183.377 kb on - strandat 183.391 kb on - strandat 183.391 kb on - strandat 183.391 kb on - strandat 183.391 kb on - strandat 183.412 kb on - strandat 183.415 kb on - strandat 183.415 kb on - strandat 183.415 kb on - strandat 183.415 kb on - strandat 183.415 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 183.417 kb on - strandat 184.443 kb on + strandat 184.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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182,178 - MPMX26_00167 0.74 +1.9
182,536 - +0.9
182,591 - +0.1
182,604 - +0.6
182,688 - +0.1
182,702 - +0.3
182,702 - +1.0
182,702 - -0.4
182,717 - -0.3
182,717 - +0.3
182,737 - MPMX26_00168 0.12 +1.9
182,743 - MPMX26_00168 0.12 +1.5
182,743 - MPMX26_00168 0.12 -0.7
182,745 - MPMX26_00168 0.12 +0.4
182,745 - MPMX26_00168 0.12 +0.5
182,745 - MPMX26_00168 0.12 -1.2
182,760 - MPMX26_00168 0.14 -0.9
182,760 - MPMX26_00168 0.14 -0.3
182,760 - MPMX26_00168 0.14 -0.1
182,760 - MPMX26_00168 0.14 +0.5
182,762 - MPMX26_00168 0.15 +0.1
182,784 - MPMX26_00168 0.17 +0.7
182,792 - MPMX26_00168 0.18 +0.1
182,804 - MPMX26_00168 0.20 -0.1
182,804 - MPMX26_00168 0.20 +0.2
182,804 - MPMX26_00168 0.20 +0.4
182,804 - MPMX26_00168 0.20 -0.1
182,804 - MPMX26_00168 0.20 -0.0
182,804 - MPMX26_00168 0.20 -0.5
182,804 - MPMX26_00168 0.20 +0.4
182,806 - MPMX26_00168 0.20 +0.4
182,806 - MPMX26_00168 0.20 -0.2
182,806 - MPMX26_00168 0.20 +1.3
182,806 - MPMX26_00168 0.20 +0.2
182,813 - MPMX26_00168 0.21 +0.2
182,846 - MPMX26_00168 0.25 -0.2
182,846 - MPMX26_00168 0.25 +0.2
182,848 - MPMX26_00168 0.25 -0.0
182,892 - MPMX26_00168 0.31 +0.3
182,905 - MPMX26_00168 0.32 +0.4
182,907 - MPMX26_00168 0.32 +0.9
182,916 - MPMX26_00168 0.33 +0.7
182,936 - MPMX26_00168 0.36 +0.1
182,936 - MPMX26_00168 0.36 -0.3
182,945 - MPMX26_00168 0.37 +0.0
182,959 - MPMX26_00168 0.39 +0.2
182,968 - MPMX26_00168 0.40 +0.5
182,968 - MPMX26_00168 0.40 -0.3
182,971 - MPMX26_00168 0.40 +1.0
183,058 - MPMX26_00168 0.51 -0.2
183,105 - MPMX26_00168 0.57 +0.7
183,105 - MPMX26_00168 0.57 -0.1
183,107 - MPMX26_00168 0.57 +0.7
183,107 - MPMX26_00168 0.57 +0.5
183,107 - MPMX26_00168 0.57 +0.0
183,107 - MPMX26_00168 0.57 -0.4
183,107 - MPMX26_00168 0.57 -0.4
183,107 - MPMX26_00168 0.57 +0.2
183,107 - MPMX26_00168 0.57 +0.7
183,107 - MPMX26_00168 0.57 +1.3
183,126 - MPMX26_00168 0.59 +0.2
183,131 - MPMX26_00168 0.60 -0.0
183,140 - MPMX26_00168 0.61 +0.1
183,196 - MPMX26_00168 0.68 +0.5
183,204 - MPMX26_00168 0.69 +0.5
183,206 - MPMX26_00168 0.69 +0.2
183,206 - MPMX26_00168 0.69 -0.2
183,211 - MPMX26_00168 0.70 +1.3
183,220 - MPMX26_00168 0.71 +0.7
183,222 - MPMX26_00168 0.71 +0.3
183,235 - MPMX26_00168 0.73 -0.9
183,255 - MPMX26_00168 0.75 -0.2
183,277 + MPMX26_00168 0.78 +0.6
183,277 + MPMX26_00168 0.78 +3.4
183,277 + MPMX26_00168 0.78 -0.1
183,277 + MPMX26_00168 0.78 -0.7
183,277 - MPMX26_00168 0.78 -0.7
183,285 - MPMX26_00168 0.79 +0.1
183,285 - MPMX26_00168 0.79 -0.7
183,285 - MPMX26_00168 0.79 +0.4
183,285 - MPMX26_00168 0.79 +0.5
183,285 - MPMX26_00168 0.79 -0.4
183,285 - MPMX26_00168 0.79 +0.3
183,285 - MPMX26_00168 0.79 -1.5
183,285 - MPMX26_00168 0.79 +0.3
183,285 - MPMX26_00168 0.79 -0.6
183,285 - MPMX26_00168 0.79 -0.6
183,285 - MPMX26_00168 0.79 -0.0
183,285 - MPMX26_00168 0.79 -0.6
183,285 - MPMX26_00168 0.79 +0.4
183,285 - MPMX26_00168 0.79 -0.9
183,285 - MPMX26_00168 0.79 -0.9
183,285 - MPMX26_00168 0.79 +0.6
183,285 - MPMX26_00168 0.79 +0.2
183,285 - MPMX26_00168 0.79 +0.3
183,285 - MPMX26_00168 0.79 -0.0
183,285 - MPMX26_00168 0.79 +0.9
183,285 - MPMX26_00168 0.79 -0.7
183,285 - MPMX26_00168 0.79 -1.3
183,285 - MPMX26_00168 0.79 -0.1
183,285 - MPMX26_00168 0.79 -0.2
183,285 - MPMX26_00168 0.79 +3.2
183,285 - MPMX26_00168 0.79 +0.2
183,285 - MPMX26_00168 0.79 -0.3
183,285 - MPMX26_00168 0.79 -0.0
183,285 - MPMX26_00168 0.79 -0.3
183,290 - MPMX26_00168 0.79 -0.3
183,290 - MPMX26_00168 0.79 +1.9
183,322 - MPMX26_00168 0.83 -0.2
183,322 - MPMX26_00168 0.83 -1.2
183,323 - MPMX26_00168 0.83 -1.1
183,323 - MPMX26_00168 0.83 -0.1
183,323 - MPMX26_00168 0.83 +0.1
183,329 - MPMX26_00168 0.84 +0.7
183,329 - MPMX26_00168 0.84 -0.4
183,331 - MPMX26_00168 0.84 -0.1
183,363 - MPMX26_00168 0.88 +0.1
183,377 - +0.9
183,391 - +0.7
183,391 - -0.6
183,391 - -2.2
183,391 - +0.2
183,412 - +0.6
183,415 - +0.0
183,415 - +1.0
183,415 - -0.5
183,415 - +0.0
183,415 - +0.2
183,417 - -0.8
183,417 - -0.0
183,417 - +0.6
183,417 - -0.5
183,417 - -0.3
183,417 - -0.8
183,417 - +0.0
184,443 + -0.1
184,451 - -0.1

Or see this region's nucleotide sequence