Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00162

Experiment: TSB with Dermcidin 2 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00161 and MPMX26_00162 are separated by 0 nucleotidesMPMX26_00162 and MPMX26_00163 are separated by 24 nucleotides MPMX26_00161: MPMX26_00161 - putative CtpA-like serine protease, at 173,831 to 175,018 _00161 MPMX26_00162: MPMX26_00162 - Regulatory protein AtoC, at 175,019 to 176,434 _00162 MPMX26_00163: MPMX26_00163 - Adaptive-response sensory-kinase SasA, at 176,459 to 178,024 _00163 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 175.000 kb on - strandat 175.037 kb on - strandat 175.037 kb on - strandat 175.117 kb on - strandat 175.117 kb on - strandat 175.119 kb on + strandat 175.125 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.127 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.132 kb on - strandat 175.137 kb on - strandat 175.144 kb on - strandat 175.234 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.287 kb on - strand, within MPMX26_00162at 175.294 kb on - strand, within MPMX26_00162at 175.365 kb on - strand, within MPMX26_00162at 175.502 kb on - strand, within MPMX26_00162at 175.517 kb on - strand, within MPMX26_00162at 175.594 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.688 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.703 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.754 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.774 kb on - strand, within MPMX26_00162at 175.823 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.837 kb on - strand, within MPMX26_00162at 175.855 kb on - strand, within MPMX26_00162at 175.877 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.904 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.918 kb on - strand, within MPMX26_00162at 175.943 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.945 kb on - strand, within MPMX26_00162at 175.956 kb on - strand, within MPMX26_00162at 176.015 kb on - strand, within MPMX26_00162at 176.044 kb on - strand, within MPMX26_00162at 176.066 kb on - strand, within MPMX26_00162at 176.072 kb on - strand, within MPMX26_00162at 176.072 kb on - strand, within MPMX26_00162at 176.075 kb on - strand, within MPMX26_00162at 176.087 kb on - strand, within MPMX26_00162at 176.110 kb on - strand, within MPMX26_00162at 176.216 kb on - strand, within MPMX26_00162at 176.238 kb on - strand, within MPMX26_00162at 176.264 kb on - strand, within MPMX26_00162at 176.269 kb on - strand, within MPMX26_00162at 176.387 kb on - strandat 176.387 kb on - strandat 176.582 kb on - strandat 176.911 kb on - strand, within MPMX26_00163at 176.923 kb on - strand, within MPMX26_00163at 176.923 kb on - strand, within MPMX26_00163at 177.157 kb on - strand, within MPMX26_00163at 177.157 kb on - strand, within MPMX26_00163at 177.203 kb on - strand, within MPMX26_00163at 177.238 kb on - strand, within MPMX26_00163at 177.238 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.272 kb on - strand, within MPMX26_00163at 177.275 kb on - strand, within MPMX26_00163at 177.277 kb on - strand, within MPMX26_00163at 177.277 kb on - strand, within MPMX26_00163at 177.282 kb on - strand, within MPMX26_00163at 177.342 kb on - strand, within MPMX26_00163

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
remove
175,000 - +0.1
175,037 - +2.3
175,037 - +0.8
175,117 - +0.4
175,117 - +0.8
175,119 + +0.8
175,125 - +1.5
175,127 - -1.0
175,127 - -0.8
175,127 - +1.1
175,127 - +1.1
175,127 - -0.0
175,127 - -2.2
175,127 - +0.2
175,127 - +2.9
175,127 - -0.4
175,127 - +0.9
175,127 - -0.5
175,127 - +0.7
175,127 - +0.8
175,127 - +0.8
175,132 - +0.4
175,132 - +0.8
175,132 - -0.2
175,132 - +0.4
175,132 - +0.3
175,137 - -0.3
175,144 - +1.0
175,234 - MPMX26_00162 0.15 -0.1
175,287 - MPMX26_00162 0.19 -0.2
175,287 - MPMX26_00162 0.19 +0.9
175,287 - MPMX26_00162 0.19 -0.3
175,294 - MPMX26_00162 0.19 +1.2
175,365 - MPMX26_00162 0.24 +0.4
175,502 - MPMX26_00162 0.34 -0.8
175,517 - MPMX26_00162 0.35 +0.9
175,594 - MPMX26_00162 0.41 +1.0
175,688 - MPMX26_00162 0.47 -0.2
175,688 - MPMX26_00162 0.47 +0.3
175,703 - MPMX26_00162 0.48 +0.7
175,703 - MPMX26_00162 0.48 +1.0
175,703 - MPMX26_00162 0.48 +0.5
175,754 - MPMX26_00162 0.52 +1.3
175,754 - MPMX26_00162 0.52 +0.9
175,774 - MPMX26_00162 0.53 -0.7
175,774 - MPMX26_00162 0.53 +2.3
175,774 - MPMX26_00162 0.53 +0.1
175,774 - MPMX26_00162 0.53 +0.5
175,823 - MPMX26_00162 0.57 +1.0
175,837 - MPMX26_00162 0.58 +1.6
175,837 - MPMX26_00162 0.58 +0.6
175,855 - MPMX26_00162 0.59 +0.3
175,877 - MPMX26_00162 0.61 +0.8
175,904 - MPMX26_00162 0.62 +0.4
175,904 - MPMX26_00162 0.62 +0.7
175,918 - MPMX26_00162 0.63 +1.3
175,918 - MPMX26_00162 0.63 +0.6
175,918 - MPMX26_00162 0.63 +0.2
175,918 - MPMX26_00162 0.63 +0.4
175,918 - MPMX26_00162 0.63 +1.4
175,918 - MPMX26_00162 0.63 -0.9
175,918 - MPMX26_00162 0.63 -0.1
175,918 - MPMX26_00162 0.63 +1.0
175,943 - MPMX26_00162 0.65 +0.1
175,945 - MPMX26_00162 0.65 -0.3
175,945 - MPMX26_00162 0.65 +0.9
175,956 - MPMX26_00162 0.66 +0.4
176,015 - MPMX26_00162 0.70 +0.5
176,044 - MPMX26_00162 0.72 +0.3
176,066 - MPMX26_00162 0.74 +0.9
176,072 - MPMX26_00162 0.74 +0.4
176,072 - MPMX26_00162 0.74 +0.3
176,075 - MPMX26_00162 0.75 +0.3
176,087 - MPMX26_00162 0.75 -0.1
176,110 - MPMX26_00162 0.77 +0.8
176,216 - MPMX26_00162 0.85 +0.7
176,238 - MPMX26_00162 0.86 -0.4
176,264 - MPMX26_00162 0.88 -0.2
176,269 - MPMX26_00162 0.88 -0.0
176,387 - +0.2
176,387 - +0.7
176,582 - -0.5
176,911 - MPMX26_00163 0.29 +0.8
176,923 - MPMX26_00163 0.30 +0.9
176,923 - MPMX26_00163 0.30 +0.3
177,157 - MPMX26_00163 0.45 +1.1
177,157 - MPMX26_00163 0.45 +1.5
177,203 - MPMX26_00163 0.48 +1.5
177,238 - MPMX26_00163 0.50 +0.3
177,238 - MPMX26_00163 0.50 +0.2
177,272 - MPMX26_00163 0.52 +1.3
177,272 - MPMX26_00163 0.52 +0.5
177,272 - MPMX26_00163 0.52 +0.1
177,272 - MPMX26_00163 0.52 +0.8
177,272 - MPMX26_00163 0.52 +2.9
177,275 - MPMX26_00163 0.52 +0.7
177,277 - MPMX26_00163 0.52 +0.8
177,277 - MPMX26_00163 0.52 +0.3
177,282 - MPMX26_00163 0.53 -0.4
177,342 - MPMX26_00163 0.56 +2.9

Or see this region's nucleotide sequence