Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asmA and JDDGAC_28395 are separated by 52 nucleotides JDDGAC_28395 and JDDGAC_28400 overlap by 11 nucleotides JDDGAC_28400 and yegH are separated by 74 nucleotides yegH and wza are separated by 658 nucleotides
JDDGAC_28390: asmA - outer membrane assembly protein AsmA, at 5,441,777 to 5,443,630
asmA
JDDGAC_28395: JDDGAC_28395 - transcriptional regulator, at 5,443,683 to 5,443,973
_28395
JDDGAC_28400: JDDGAC_28400 - Addiction module toxin RelE, at 5,443,963 to 5,444,301
_28400
JDDGAC_28405: yegH - UPF0053 protein YegH, at 5,444,376 to 5,445,959
yegH
JDDGAC_28410: wza - polysaccharide export protein Wza, at 5,446,618 to 5,447,757
wza
Position (kb) 5444
5445
5446 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5443.496 kb on + strand at 5443.496 kb on + strand at 5443.641 kb on - strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.643 kb on - strand at 5443.643 kb on - strand at 5443.643 kb on - strand at 5443.676 kb on + strand at 5443.677 kb on - strand at 5443.721 kb on + strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.998 kb on + strand, within JDDGAC_28400 at 5444.099 kb on + strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.112 kb on - strand, within JDDGAC_28400 at 5444.192 kb on - strand, within JDDGAC_28400 at 5444.303 kb on - strand at 5444.519 kb on - strand at 5444.519 kb on - strand at 5444.548 kb on + strand, within yegH at 5444.582 kb on - strand, within yegH at 5444.582 kb on - strand, within yegH at 5444.606 kb on + strand, within yegH at 5444.607 kb on - strand, within yegH at 5444.649 kb on - strand, within yegH at 5444.718 kb on + strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.848 kb on - strand, within yegH at 5444.890 kb on - strand, within yegH at 5444.890 kb on - strand, within yegH at 5445.044 kb on + strand, within yegH at 5445.044 kb on + strand, within yegH at 5445.059 kb on + strand, within yegH at 5445.074 kb on + strand, within yegH at 5445.074 kb on + strand, within yegH at 5445.111 kb on - strand, within yegH at 5445.498 kb on + strand, within yegH at 5445.499 kb on - strand, within yegH at 5445.696 kb on + strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.697 kb on - strand, within yegH at 5445.716 kb on + strand, within yegH at 5445.870 kb on - strand at 5445.960 kb on - strand at 5445.967 kb on - strand at 5446.050 kb on - strand at 5446.069 kb on + strand at 5446.320 kb on + strand at 5446.897 kb on - strand, within wza
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,443,496 + -0.5 5,443,496 + -0.0 5,443,641 - +3.0 5,443,642 + -0.3 5,443,642 + -0.6 5,443,642 + -0.1 5,443,642 + +0.7 5,443,643 - +0.6 5,443,643 - -0.5 5,443,643 - +0.7 5,443,676 + -1.1 5,443,677 - +0.1 5,443,721 + JDDGAC_28395 0.13 -1.5 5,443,722 - JDDGAC_28395 0.13 +0.3 5,443,722 - JDDGAC_28395 0.13 -2.6 5,443,722 - JDDGAC_28395 0.13 +0.6 5,443,722 - JDDGAC_28395 0.13 -2.6 5,443,722 - JDDGAC_28395 0.13 +0.0 5,443,722 - JDDGAC_28395 0.13 +0.1 5,443,998 + JDDGAC_28400 0.10 -0.1 5,444,099 + JDDGAC_28400 0.40 -0.7 5,444,100 - JDDGAC_28400 0.40 +0.3 5,444,100 - JDDGAC_28400 0.40 +1.2 5,444,100 - JDDGAC_28400 0.40 -0.8 5,444,112 - JDDGAC_28400 0.44 +0.1 5,444,192 - JDDGAC_28400 0.68 -1.4 5,444,303 - +1.1 5,444,519 - -0.3 5,444,519 - -1.5 5,444,548 + yegH JDDGAC_28405 0.11 +0.9 5,444,582 - yegH JDDGAC_28405 0.13 +1.4 5,444,582 - yegH JDDGAC_28405 0.13 +0.4 5,444,606 + yegH JDDGAC_28405 0.15 +0.5 5,444,607 - yegH JDDGAC_28405 0.15 +0.7 5,444,649 - yegH JDDGAC_28405 0.17 -0.1 5,444,718 + yegH JDDGAC_28405 0.22 -0.4 5,444,719 - yegH JDDGAC_28405 0.22 -0.7 5,444,719 - yegH JDDGAC_28405 0.22 +0.2 5,444,719 - yegH JDDGAC_28405 0.22 +0.2 5,444,806 - yegH JDDGAC_28405 0.27 -2.7 5,444,806 - yegH JDDGAC_28405 0.27 +0.4 5,444,806 - yegH JDDGAC_28405 0.27 +0.8 5,444,848 - yegH JDDGAC_28405 0.30 -2.1 5,444,890 - yegH JDDGAC_28405 0.32 +0.7 5,444,890 - yegH JDDGAC_28405 0.32 +1.4 5,445,044 + yegH JDDGAC_28405 0.42 +0.4 5,445,044 + yegH JDDGAC_28405 0.42 -1.5 5,445,059 + yegH JDDGAC_28405 0.43 +0.7 5,445,074 + yegH JDDGAC_28405 0.44 -1.0 5,445,074 + yegH JDDGAC_28405 0.44 -0.0 5,445,111 - yegH JDDGAC_28405 0.46 +0.3 5,445,498 + yegH JDDGAC_28405 0.71 -1.1 5,445,499 - yegH JDDGAC_28405 0.71 -1.8 5,445,696 + yegH JDDGAC_28405 0.83 +0.0 5,445,697 - yegH JDDGAC_28405 0.83 -0.3 5,445,697 - yegH JDDGAC_28405 0.83 -0.1 5,445,697 - yegH JDDGAC_28405 0.83 -0.3 5,445,716 + yegH JDDGAC_28405 0.85 -0.5 5,445,870 - +2.0 5,445,960 - -0.1 5,445,967 - +0.2 5,446,050 - +0.6 5,446,069 + -1.0 5,446,320 + -0.3 5,446,897 - wza JDDGAC_28410 0.24 +0.7
Or see this region's nucleotide sequence