Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejM and yejL are separated by 19 nucleotides yejL and yejK are separated by 181 nucleotides yejK and rplY are separated by 138 nucleotides rplY and radD are separated by 124 nucleotides
JDDGAC_27295: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 5,239,892 to 5,241,652
yejM
JDDGAC_27300: yejL - UPF0352 protein YejL, at 5,241,672 to 5,241,899
yejL
JDDGAC_27305: yejK - nucleoid-associated protein YejK, at 5,242,081 to 5,243,088
yejK
JDDGAC_27310: rplY - 50S ribosomal protein L25, at 5,243,227 to 5,243,511
rplY
JDDGAC_27315: radD - Putative DNA repair helicase RadD, at 5,243,636 to 5,245,396
radD
Position (kb) 5242
5243
5244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5241.915 kb on - strand at 5241.935 kb on - strand at 5241.935 kb on - strand at 5241.935 kb on - strand at 5242.004 kb on - strand at 5242.022 kb on + strand at 5242.023 kb on - strand at 5242.078 kb on - strand at 5242.119 kb on + strand at 5242.120 kb on - strand at 5242.120 kb on - strand at 5242.200 kb on - strand, within yejK at 5242.219 kb on + strand, within yejK at 5242.222 kb on - strand, within yejK at 5242.222 kb on - strand, within yejK at 5242.233 kb on + strand, within yejK at 5242.251 kb on + strand, within yejK at 5242.321 kb on - strand, within yejK at 5242.363 kb on + strand, within yejK at 5242.424 kb on - strand, within yejK at 5242.424 kb on - strand, within yejK at 5242.498 kb on + strand, within yejK at 5242.499 kb on - strand, within yejK at 5242.499 kb on - strand, within yejK at 5242.521 kb on + strand, within yejK at 5242.759 kb on + strand, within yejK at 5242.761 kb on + strand, within yejK at 5242.762 kb on - strand, within yejK at 5242.762 kb on - strand, within yejK at 5242.765 kb on + strand, within yejK at 5242.766 kb on - strand, within yejK at 5242.771 kb on - strand, within yejK at 5243.026 kb on - strand at 5243.101 kb on + strand at 5243.229 kb on - strand at 5243.631 kb on + strand at 5243.706 kb on + strand at 5243.907 kb on + strand, within radD at 5243.911 kb on - strand, within radD at 5243.976 kb on - strand, within radD at 5243.976 kb on - strand, within radD at 5243.978 kb on + strand, within radD at 5244.011 kb on + strand, within radD at 5244.011 kb on + strand, within radD at 5244.012 kb on - strand, within radD at 5244.016 kb on + strand, within radD at 5244.016 kb on + strand, within radD at 5244.017 kb on - strand, within radD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,241,915 - +0.1 5,241,935 - -1.9 5,241,935 - +1.8 5,241,935 - +0.7 5,242,004 - +1.3 5,242,022 + +0.3 5,242,023 - +0.1 5,242,078 - +0.5 5,242,119 + -0.8 5,242,120 - -0.5 5,242,120 - -0.1 5,242,200 - yejK JDDGAC_27305 0.12 -0.4 5,242,219 + yejK JDDGAC_27305 0.14 +1.1 5,242,222 - yejK JDDGAC_27305 0.14 -1.8 5,242,222 - yejK JDDGAC_27305 0.14 -1.5 5,242,233 + yejK JDDGAC_27305 0.15 +0.1 5,242,251 + yejK JDDGAC_27305 0.17 +1.0 5,242,321 - yejK JDDGAC_27305 0.24 +0.5 5,242,363 + yejK JDDGAC_27305 0.28 +0.1 5,242,424 - yejK JDDGAC_27305 0.34 -0.5 5,242,424 - yejK JDDGAC_27305 0.34 -0.5 5,242,498 + yejK JDDGAC_27305 0.41 +0.2 5,242,499 - yejK JDDGAC_27305 0.41 +0.3 5,242,499 - yejK JDDGAC_27305 0.41 +2.1 5,242,521 + yejK JDDGAC_27305 0.44 -0.6 5,242,759 + yejK JDDGAC_27305 0.67 +0.9 5,242,761 + yejK JDDGAC_27305 0.67 -2.3 5,242,762 - yejK JDDGAC_27305 0.68 -1.2 5,242,762 - yejK JDDGAC_27305 0.68 -0.4 5,242,765 + yejK JDDGAC_27305 0.68 -0.0 5,242,766 - yejK JDDGAC_27305 0.68 -2.1 5,242,771 - yejK JDDGAC_27305 0.68 +0.9 5,243,026 - -1.7 5,243,101 + -0.6 5,243,229 - -0.7 5,243,631 + -0.2 5,243,706 + -2.5 5,243,907 + radD JDDGAC_27315 0.15 +1.6 5,243,911 - radD JDDGAC_27315 0.16 +1.4 5,243,976 - radD JDDGAC_27315 0.19 -1.2 5,243,976 - radD JDDGAC_27315 0.19 +0.4 5,243,978 + radD JDDGAC_27315 0.19 -1.4 5,244,011 + radD JDDGAC_27315 0.21 -0.6 5,244,011 + radD JDDGAC_27315 0.21 -1.0 5,244,012 - radD JDDGAC_27315 0.21 -1.2 5,244,016 + radD JDDGAC_27315 0.22 -2.1 5,244,016 + radD JDDGAC_27315 0.22 -0.2 5,244,017 - radD JDDGAC_27315 0.22 -0.4
Or see this region's nucleotide sequence