Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qseE and qseG are separated by 164 nucleotides qseG and qseF overlap by 11 nucleotides
JDDGAC_25150: qseE - two component system sensor histidine kinase QseE/GlrK, at 4,808,008 to 4,809,390
qseE
JDDGAC_25155: qseG - two-component system QseEF-associated lipoprotein QseG, at 4,809,555 to 4,810,268
qseG
JDDGAC_25160: qseF - two-component system response regulator QseF/GlrR, at 4,810,258 to 4,811,592
qseF
Position (kb)
4809
4810
4811 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4808.571 kb on + strand, within qseE at 4808.648 kb on + strand, within qseE at 4808.667 kb on + strand, within qseE at 4808.667 kb on + strand, within qseE at 4808.668 kb on - strand, within qseE at 4808.732 kb on + strand, within qseE at 4808.784 kb on - strand, within qseE at 4808.893 kb on + strand, within qseE at 4808.893 kb on + strand, within qseE at 4808.901 kb on + strand, within qseE at 4808.928 kb on - strand, within qseE at 4808.932 kb on - strand, within qseE at 4808.963 kb on + strand, within qseE at 4808.963 kb on + strand, within qseE at 4809.065 kb on + strand, within qseE at 4809.072 kb on + strand, within qseE at 4809.138 kb on - strand, within qseE at 4809.138 kb on - strand, within qseE at 4809.154 kb on + strand, within qseE at 4809.154 kb on + strand, within qseE at 4809.154 kb on + strand, within qseE at 4809.155 kb on - strand, within qseE at 4809.156 kb on + strand, within qseE at 4809.171 kb on + strand, within qseE at 4809.171 kb on + strand, within qseE at 4809.275 kb on + strand at 4809.295 kb on - strand at 4809.303 kb on + strand at 4809.319 kb on + strand at 4809.319 kb on + strand at 4809.319 kb on + strand at 4809.320 kb on - strand at 4809.320 kb on - strand at 4809.365 kb on + strand at 4809.395 kb on - strand at 4809.421 kb on - strand at 4809.421 kb on - strand at 4809.462 kb on + strand at 4809.462 kb on + strand at 4809.463 kb on - strand at 4809.472 kb on - strand at 4809.472 kb on - strand at 4809.472 kb on - strand at 4809.472 kb on - strand at 4809.472 kb on - strand at 4809.520 kb on + strand at 4809.542 kb on - strand at 4809.542 kb on - strand at 4809.542 kb on - strand at 4809.578 kb on - strand at 4809.625 kb on + strand at 4809.625 kb on + strand at 4809.625 kb on + strand at 4809.626 kb on - strand at 4809.626 kb on - strand at 4809.746 kb on + strand, within qseG at 4809.863 kb on + strand, within qseG at 4809.870 kb on - strand, within qseG at 4809.946 kb on + strand, within qseG at 4809.947 kb on - strand, within qseG at 4809.982 kb on - strand, within qseG at 4810.015 kb on + strand, within qseG at 4810.016 kb on - strand, within qseG at 4810.016 kb on - strand, within qseG at 4810.080 kb on - strand, within qseG at 4810.080 kb on - strand, within qseG at 4810.105 kb on + strand, within qseG at 4810.106 kb on - strand, within qseG at 4810.266 kb on + strand at 4810.267 kb on - strand at 4810.280 kb on + strand at 4810.280 kb on + strand at 4810.281 kb on - strand at 4810.281 kb on - strand at 4810.284 kb on - strand at 4810.382 kb on + strand at 4810.507 kb on - strand, within qseF at 4810.595 kb on + strand, within qseF at 4810.596 kb on - strand, within qseF at 4810.821 kb on + strand, within qseF at 4810.822 kb on - strand, within qseF at 4810.822 kb on - strand, within qseF at 4810.828 kb on - strand, within qseF at 4810.952 kb on + strand, within qseF at 4810.953 kb on - strand, within qseF at 4811.137 kb on + strand, within qseF at 4811.137 kb on + strand, within qseF at 4811.138 kb on - strand, within qseF at 4811.244 kb on + strand, within qseF at 4811.244 kb on + strand, within qseF at 4811.244 kb on + strand, within qseF at 4811.245 kb on - strand, within qseF at 4811.245 kb on - strand, within qseF at 4811.245 kb on - strand, within qseF at 4811.245 kb on - strand, within qseF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,808,571 + qseE JDDGAC_25150 0.41 -1.4 4,808,648 + qseE JDDGAC_25150 0.46 +0.5 4,808,667 + qseE JDDGAC_25150 0.48 -0.0 4,808,667 + qseE JDDGAC_25150 0.48 +0.6 4,808,668 - qseE JDDGAC_25150 0.48 -0.2 4,808,732 + qseE JDDGAC_25150 0.52 -1.4 4,808,784 - qseE JDDGAC_25150 0.56 -0.6 4,808,893 + qseE JDDGAC_25150 0.64 +2.7 4,808,893 + qseE JDDGAC_25150 0.64 -0.7 4,808,901 + qseE JDDGAC_25150 0.65 +0.2 4,808,928 - qseE JDDGAC_25150 0.67 +0.7 4,808,932 - qseE JDDGAC_25150 0.67 +0.0 4,808,963 + qseE JDDGAC_25150 0.69 +0.5 4,808,963 + qseE JDDGAC_25150 0.69 +0.4 4,809,065 + qseE JDDGAC_25150 0.76 -0.6 4,809,072 + qseE JDDGAC_25150 0.77 -0.1 4,809,138 - qseE JDDGAC_25150 0.82 -0.6 4,809,138 - qseE JDDGAC_25150 0.82 -0.2 4,809,154 + qseE JDDGAC_25150 0.83 -1.4 4,809,154 + qseE JDDGAC_25150 0.83 +0.0 4,809,154 + qseE JDDGAC_25150 0.83 -0.1 4,809,155 - qseE JDDGAC_25150 0.83 +0.5 4,809,156 + qseE JDDGAC_25150 0.83 +0.1 4,809,171 + qseE JDDGAC_25150 0.84 -1.1 4,809,171 + qseE JDDGAC_25150 0.84 +0.2 4,809,275 + +1.2 4,809,295 - +0.4 4,809,303 + -1.0 4,809,319 + -0.0 4,809,319 + -0.1 4,809,319 + -1.9 4,809,320 - +0.5 4,809,320 - +0.7 4,809,365 + +0.6 4,809,395 - -1.4 4,809,421 - +0.5 4,809,421 - +0.2 4,809,462 + +1.6 4,809,462 + +0.6 4,809,463 - +0.3 4,809,472 - +0.4 4,809,472 - -1.7 4,809,472 - -0.1 4,809,472 - -1.3 4,809,472 - -0.7 4,809,520 + -2.7 4,809,542 - -1.2 4,809,542 - -0.4 4,809,542 - +0.1 4,809,578 - -0.4 4,809,625 + -0.9 4,809,625 + -0.1 4,809,625 + -1.2 4,809,626 - +1.0 4,809,626 - -0.8 4,809,746 + qseG JDDGAC_25155 0.27 -0.1 4,809,863 + qseG JDDGAC_25155 0.43 +0.9 4,809,870 - qseG JDDGAC_25155 0.44 +0.3 4,809,946 + qseG JDDGAC_25155 0.55 -0.1 4,809,947 - qseG JDDGAC_25155 0.55 +1.3 4,809,982 - qseG JDDGAC_25155 0.60 +0.4 4,810,015 + qseG JDDGAC_25155 0.64 -0.5 4,810,016 - qseG JDDGAC_25155 0.65 +0.2 4,810,016 - qseG JDDGAC_25155 0.65 -2.2 4,810,080 - qseG JDDGAC_25155 0.74 -0.1 4,810,080 - qseG JDDGAC_25155 0.74 -1.9 4,810,105 + qseG JDDGAC_25155 0.77 -1.3 4,810,106 - qseG JDDGAC_25155 0.77 -0.0 4,810,266 + +1.0 4,810,267 - +0.8 4,810,280 + -0.1 4,810,280 + +0.4 4,810,281 - +0.9 4,810,281 - +0.4 4,810,284 - +2.0 4,810,382 + +0.3 4,810,507 - qseF JDDGAC_25160 0.19 +2.3 4,810,595 + qseF JDDGAC_25160 0.25 -0.1 4,810,596 - qseF JDDGAC_25160 0.25 +0.5 4,810,821 + qseF JDDGAC_25160 0.42 -0.0 4,810,822 - qseF JDDGAC_25160 0.42 +0.7 4,810,822 - qseF JDDGAC_25160 0.42 -0.0 4,810,828 - qseF JDDGAC_25160 0.43 +0.4 4,810,952 + qseF JDDGAC_25160 0.52 +1.5 4,810,953 - qseF JDDGAC_25160 0.52 -0.2 4,811,137 + qseF JDDGAC_25160 0.66 +0.2 4,811,137 + qseF JDDGAC_25160 0.66 -0.1 4,811,138 - qseF JDDGAC_25160 0.66 +0.1 4,811,244 + qseF JDDGAC_25160 0.74 -0.0 4,811,244 + qseF JDDGAC_25160 0.74 -1.5 4,811,244 + qseF JDDGAC_25160 0.74 +0.1 4,811,245 - qseF JDDGAC_25160 0.74 -0.0 4,811,245 - qseF JDDGAC_25160 0.74 +0.4 4,811,245 - qseF JDDGAC_25160 0.74 +2.9 4,811,245 - qseF JDDGAC_25160 0.74 +0.7
Or see this region's nucleotide sequence