Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15955

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGly_trna and Gly_trna are separated by 36 nucleotidesGly_trna and orn are separated by 210 nucleotidesorn and rsgA are separated by 94 nucleotidesrsgA and asd are separated by 96 nucleotides JDDGAC_15940: Gly_trna - tRNA-Gly(gcc), at 2,999,600 to 2,999,675 _trna JDDGAC_15945: Gly_trna - tRNA-Gly(gcc), at 2,999,712 to 2,999,787 _trna JDDGAC_15950: orn - oligoribonuclease, at 2,999,998 to 3,000,543 orn JDDGAC_15955: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 3,000,638 to 3,001,690 rsgA JDDGAC_15960: asd - archaetidylserine decarboxylase, at 3,001,787 to 3,002,755 asd Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -1 0 1at 2999.790 kb on - strandat 2999.793 kb on - strandat 2999.793 kb on - strandat 2999.793 kb on - strandat 2999.979 kb on + strandat 3000.571 kb on - strandat 3000.571 kb on - strandat 3000.571 kb on - strandat 3000.573 kb on - strandat 3000.573 kb on - strandat 3000.593 kb on - strandat 3000.597 kb on + strandat 3000.597 kb on + strandat 3000.597 kb on + strandat 3001.654 kb on - strandat 3001.678 kb on + strandat 3001.695 kb on + strandat 3001.695 kb on + strandat 3001.695 kb on + strandat 3001.700 kb on + strandat 3001.710 kb on + strandat 3001.744 kb on + strandat 3002.640 kb on + strand, within asdat 3002.640 kb on + strand, within asdat 3002.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,999,790 - -0.7
2,999,793 - -0.8
2,999,793 - -0.3
2,999,793 - -0.1
2,999,979 + -0.9
3,000,571 - -0.2
3,000,571 - -0.7
3,000,571 - +0.6
3,000,573 - -0.1
3,000,573 - -0.8
3,000,593 - -0.9
3,000,597 + -1.4
3,000,597 + -0.9
3,000,597 + +0.2
3,001,654 - +1.4
3,001,678 + +1.2
3,001,695 + +1.3
3,001,695 + -0.3
3,001,695 + -0.4
3,001,700 + +1.3
3,001,710 + +0.5
3,001,744 + -0.2
3,002,640 + asd JDDGAC_15960 0.88 -0.3
3,002,640 + asd JDDGAC_15960 0.88 -0.1
3,002,659 + +0.1

Or see this region's nucleotide sequence